Vnig012355.2
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000034.1:1578797-1581103[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3 5.9e+03 -1.9 0.0 27 42 62 77 59 91 0.69 2 10 0.11 2.1e+02 2.7 0.2 21 43 318 340 310 345 0.89 3 10 0.0024 4.3 8.1 0.1 20 43 373 396 357 401 0.81 4 10 0.011 20 5.9 0.1 21 44 402 425 397 433 0.86 5 10 0.055 97 3.8 0.0 21 43 430 452 424 457 0.89 6 10 0.00027 0.49 11.1 0.0 20 43 457 480 445 485 0.82 7 10 0.0047 8.5 7.2 0.1 21 43 486 508 480 513 0.88 8 10 0.0099 18 6.1 0.0 21 43 514 536 509 540 0.89 9 10 0.0052 9.3 7.0 0.1 21 43 542 564 537 568 0.88 10 10 0.0031 5.5 7.7 0.1 21 47 570 596 565 601 0.85
Sequence Information
- Coding Sequence
- atggaagAAATATCGTTAAATGTCTATGGCTTAAGTCCAATGTGTCGGCTGTGCTTATCACGAGGCATTACTTTATTAaacttatttacatttttaacaaaaatggaAGATAAAGTAGCTAATGTAGTTATGAATTGTGCTCCCATTCAGATAACAAGAAACGAtggtattccaaatttcatctGCGAATCATGTTACACTCAACTGAAAAAGAGTTACCAGTTCCAGAAGCAAGTGGTGAAGGCGGACAAAACACTGCGGCATTATCTACAGAAACTGCACGCTTCTGACAAACAAATCAAGACCGAGTGTTCAAATCAGGGATCTTCTGATGATGCTCTAATTTGTAACATCGATGCGGAACACACTGTGAAATGTGAATCTTTAGAAATGAATGTTGAATGGCAAAAAGATTTAACTAAAAATGTTGAATCAGTTTCCGAAAATAGCTCTGAAATGAGTATAAAATTCGAAATCAAAAATGAACCAATTGATAACAATGTATTATTTCCAAGAGAATGTGCTGAAGAAACACTAGAAAATTTGTCCAAGGGCGATGATAGTGGAATCATCTGTCAAGACTCAAATCTCAGTATTGGCAAAACTGAATTCAGTCAAGGATTGTATATGATAAGCGATGAACTGGCAAGTactaaaatagcaaataaaataaacaaaaacaagtcTTTCAAATCTGAAATCAAAGACGAACCGGCGGATGACAATTCTTTAATTACTTATGCTGAAAACACCGAAGAAACTTTATCAAAATGTGATGGTAGTGACATTAGCTGCGATGACTTAACAGAAACCGTTGATAAACGAGAACAAGGAATATTAAATcgtgaaaagaataaaaaagcaaatatgAGAAAGTTGTATCAGTGTTTCCAGTGTAAAAGGAGTTTTGAAACTCCGACACTTTTGAGAAGATACACGCATGTTCATACTAGAGAGAAACCATTTatatgtgacgtttgtaataagagtgtAATTATTTCAGGGAATTTAAAATCTCACCAACGTACACATATTGGTGAAAAGTTatataagtgtgacgtttgtaataagtgtttcattcATGCAGGGAATTTAAAATctcacaaacgtacacatactgaTGAAAAACCATATAAGTGTGACAtatgtaataagtgtttcaagcAGTCAGAGCATTTGAAACttcacaaacgtacacatactggtgaaaaaccatataagtgtgacgtttgtaataagtgtttcaagcAGTCAGAGCATTTGAAACttcacaaacgtacacatactggtgaaaaaccatataagtgtgacgtttgtaataagtgtttcattcAAGGAGGGAATTTAAAATctcacaaacgtacacatactgaTGAAAAACCATATAAGTGTGACAtatgtaataagtgtttcaagcAGTCTGATAATTTGAAACttcacaaacgtacacatactggtgaaaaaccatataagtgtgacatatgtaataagtgtttcaagcAGTCAGAGCATTTGAAACttcacaaacgtacacatactggtgaaaaaccatataagtgtgacgtttgtaataagtgtttcattcAATCTGGGAATTTAAAAGGtcacaaacgcacacatactGATGAAAAACCATATAAGTGTGACAtatgtaataagtgtttcaagcAGTCAGAGCATTTGAAACttcacaaacgtacacatactggtgaaaaaccatataagtgtgacgtttgtaataagtgtttcatcCAATCTGGGAATTTAAAATCTCACAAGCGTATACATACTGGCGAAAAACCATga
- Protein Sequence
- MEEISLNVYGLSPMCRLCLSRGITLLNLFTFLTKMEDKVANVVMNCAPIQITRNDGIPNFICESCYTQLKKSYQFQKQVVKADKTLRHYLQKLHASDKQIKTECSNQGSSDDALICNIDAEHTVKCESLEMNVEWQKDLTKNVESVSENSSEMSIKFEIKNEPIDNNVLFPRECAEETLENLSKGDDSGIICQDSNLSIGKTEFSQGLYMISDELASTKIANKINKNKSFKSEIKDEPADDNSLITYAENTEETLSKCDGSDISCDDLTETVDKREQGILNREKNKKANMRKLYQCFQCKRSFETPTLLRRYTHVHTREKPFICDVCNKSVIISGNLKSHQRTHIGEKLYKCDVCNKCFIHAGNLKSHKRTHTDEKPYKCDICNKCFKQSEHLKLHKRTHTGEKPYKCDVCNKCFKQSEHLKLHKRTHTGEKPYKCDVCNKCFIQGGNLKSHKRTHTDEKPYKCDICNKCFKQSDNLKLHKRTHTGEKPYKCDICNKCFKQSEHLKLHKRTHTGEKPYKCDVCNKCFIQSGNLKGHKRTHTDEKPYKCDICNKCFKQSEHLKLHKRTHTGEKPYKCDVCNKCFIQSGNLKSHKRIHTGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511255;
- 90% Identity
- iTF_01511255;
- 80% Identity
- iTF_01511138;