Vnig017500.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
PRDM15
Assembly
GCA_034508555.1
Location
JAVRKA010000071.1:1884655-1887761[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0004 0.011 16.7 5.5 1 23 577 599 577 599 0.99
2 11 0.00016 0.0044 18.0 1.7 1 23 605 627 605 627 0.95
3 11 0.039 1.1 10.4 2.7 1 23 633 655 633 655 0.99
4 11 3.8e-05 0.001 19.9 1.2 1 21 661 681 661 682 0.95
5 11 1.8e-05 0.00051 20.9 1.4 1 23 689 712 689 712 0.96
6 11 0.03 0.81 10.8 1.2 1 23 718 740 718 740 0.95
7 11 1.4e-05 0.00038 21.3 3.8 1 23 746 768 746 768 0.97
8 11 1.7e-05 0.00046 21.0 2.0 1 23 773 795 773 795 0.98
9 11 0.019 0.52 11.4 1.2 1 23 801 823 801 823 0.96
10 11 5.3 1.5e+02 3.7 1.5 2 23 831 850 830 850 0.92
11 11 5.4e-05 0.0015 19.4 0.4 1 23 856 879 856 879 0.97

Sequence Information

Coding Sequence
ATGGATAACAGTAAGAATATCCCAATTCAACAGAATACGATAAATGATGTGTACACTGGAAATTATGTACGATCAAATTGCGCTGAAATTAATCCCCAGCAAAATTCTGGAAGCGAAAGAACACAAAATTTTCTACCTTACAGTTTGCCAATGCCGGTGACAAGCAGCATGTCACAGTCGTTAATGTATAGCACCCAGAGTCAACcgttgtataatattatgtacggTTCGCAAGGAATGTACTCGAATCAGAATTCATTTCCAGCATCTACATTTAATACGTATACATCTCAAGTTGAGACGGCATGGTTTTCAGATTCATGCATCACAGCCACTGCTAATGAGACGATTaagctaaaaaatgcaaaacctgataagataacgaatgaaaaaataagtccGCAAAGCTGCTGCAGCAGTAATCAATTGGAAAGCATTGCTATCGGTATTTGTTCTCCGATGAGTGATACGTTCAAATCTTTAACAAGTAAAGATACAGCTATGTTTCACAACAAACCTAATATGCTGGATTCACAGTGGTACTATGGAAGTGGTTATAATTCTCAAAAATATAATGATCTACCTTCTTGTTCTCAACTGGGACAGATCGATATTTCCGACCAGCTAACTCCTAATCAGAGTCCATGCTGCCGAGATATGTCGCTGTGTCCCGATCAATTTAAGAGTACAACACCAGTAAAATATTGCAGTATACAAAAAAGCAATGATGTtgaacatttgaaaaatttttcacCGACAATACAAATGCCGCCATTtgtatcaaataataaatttatatccgAACCGTACAATACTAATTTGTACACTCCTGGAGACGTGCCTCCTTTAAGATTAGATGATAAAGTAATCGAGACAAAGAATTTTCCCAGCTGTCAGATCGATGGAACGAGATGTGAACTTGAACCGTGCGACATGTTAAGAGTTCAGCCATCTTGTCTTCAAGATTCTTGTGCCAGCATTGCTGGCAATTGTGATCTTAATGTGCAGAACAGTGCGTTTTTTCCTAACGATGATGTTAGTTGTATGGAATTATACCAGGATCCTGACCCAACCAAATTGGATATTACAAAACCTGAGAGCCAATGTGGGGGAGAAAGTGATATAATTGTAGAAGATTCTGATGACGACTCGACTGATATCAGTGATGACTGTGATAGAAATAACCAAGTTGTGTATACTTGTGCTATATGTAATGTGTCCTCTTCAGGTGAACTTATGTATTTTTGTGTGGGTGACGATACTTTACTTACGAGTACGACACAAACtcctattgtaaaaaaattggtcgatattataaaatacaaatttcctAAATCTCCGCTGGATCACATATGCAacgtttgtttaaatttaatcaaCACAGTTGACTGTTTAGAAGCAAAGTTAGAGCGTGCTAAGAAGcaattgtttcaaatatttcagaAAACTAATATTGCACTCGGAAATATTACAATGAAGAATAATGATTCTCAGTATGTTTTGAATGAACCAGTTgttgaaaaggaaaaaaaaataggaagaACGTACGAATTTCAAAGCTCTCCAGCGAAAGAAAAATCGAGTACGCTGGGGAATTCAGAGGAAGCTGTAGATACAGAACAAGAACCAGATTTTAGTCAGAACAAACGAATCTgcaaaatttgtaataaatacttTTGTCAAAGCGACGTTCAtaaacataaacaattgcatGCTAATCATATTAGCTTTAAATGTACTTTGTGTCATAGAAGTTTTACAATGAAGCGATTATTAGACAACCACATGAAGAGGCACAGCGGCCAAAGAGATTTCTTGTGTGATCGATGCGGTAGGACTTAcacgaaaaaatatagtttagaaATGCACGTTCGCCGACACGAAAAACAATACAGTTATTATTGTGAAGTTTGCAAACGGGGTTTTGTGTGTTTCACGTCACTTGAAGCCCACCGTCGTACACATTCTGATATAAAACGGTTCGATTGCAAAATCTGCCAGAAAAAGTTTCGAACGAACACAAATTTACAAGAACATGTGAGATATTGTTCTGGTGATTTACCGTTTCAGTGTGAACAGTGCGATAAAAAATTTGCTACTTCTTCAAAATTAAACGATCATGTTAAATTAAAACATGATAAGGTGTATAAATTCCTTTGTAGTGAATGTAAAATGGGATTTATAATTGAGTCGCACTATAAGGCGCATCTTACAACTCATTCGGATGAAAAACCTTTTAAATGCGAGATTTGTGGAAAATGCTACAAGACATTAGGAAATTTAAATcatcataaaataattcataaagaATTGCCTTTTAAGTGTCAAATATGCGATAAAGGTTTTAAGCGCAGAGAGAATTTTGAAATACATAAAAACAATCATTCAGGCTTAAAACCTTTTACTTGTTCTGTATGTGATAAAAAGTTTGCCGCACAAAAGTTTTTAGACCAGCATTCAAAGCTACACAGTGGCAATGTTAAGAAGAAAGTATGTAAAGTTTGCAATAAACAGTTGAGTCACGGTTTAGCCGATCATATGAGACTTCATTCtggtattaaaatgtttaaatgcaACATTTGTTCTGTGATGTTTATAACCAACGGTGCCTTAAGAAAGCATATTATTAGAAAACATAAGGAAAAATAA
Protein Sequence
MDNSKNIPIQQNTINDVYTGNYVRSNCAEINPQQNSGSERTQNFLPYSLPMPVTSSMSQSLMYSTQSQPLYNIMYGSQGMYSNQNSFPASTFNTYTSQVETAWFSDSCITATANETIKLKNAKPDKITNEKISPQSCCSSNQLESIAIGICSPMSDTFKSLTSKDTAMFHNKPNMLDSQWYYGSGYNSQKYNDLPSCSQLGQIDISDQLTPNQSPCCRDMSLCPDQFKSTTPVKYCSIQKSNDVEHLKNFSPTIQMPPFVSNNKFISEPYNTNLYTPGDVPPLRLDDKVIETKNFPSCQIDGTRCELEPCDMLRVQPSCLQDSCASIAGNCDLNVQNSAFFPNDDVSCMELYQDPDPTKLDITKPESQCGGESDIIVEDSDDDSTDISDDCDRNNQVVYTCAICNVSSSGELMYFCVGDDTLLTSTTQTPIVKKLVDIIKYKFPKSPLDHICNVCLNLINTVDCLEAKLERAKKQLFQIFQKTNIALGNITMKNNDSQYVLNEPVVEKEKKIGRTYEFQSSPAKEKSSTLGNSEEAVDTEQEPDFSQNKRICKICNKYFCQSDVHKHKQLHANHISFKCTLCHRSFTMKRLLDNHMKRHSGQRDFLCDRCGRTYTKKYSLEMHVRRHEKQYSYYCEVCKRGFVCFTSLEAHRRTHSDIKRFDCKICQKKFRTNTNLQEHVRYCSGDLPFQCEQCDKKFATSSKLNDHVKLKHDKVYKFLCSECKMGFIIESHYKAHLTTHSDEKPFKCEICGKCYKTLGNLNHHKIIHKELPFKCQICDKGFKRRENFEIHKNNHSGLKPFTCSVCDKKFAAQKFLDQHSKLHSGNVKKKVCKVCNKQLSHGLADHMRLHSGIKMFKCNICSVMFITNGALRKHIIRKHKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01531111;
90% Identity
iTF_01531111;
80% Identity
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