Vnig009087.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000021.1:2546054-2549941[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0012 0.034 15.2 3.7 3 23 170 190 169 190 0.97 2 11 0.00055 0.015 16.3 0.6 3 23 200 220 198 220 0.97 3 11 0.0053 0.15 13.2 0.5 1 23 226 249 226 249 0.97 4 11 2.1e-05 0.00058 20.7 1.1 2 23 255 276 254 276 0.98 5 11 0.006 0.17 13.0 2.0 1 23 281 303 281 303 0.97 6 11 1.4e-05 0.00039 21.3 0.1 1 23 339 362 339 362 0.97 7 11 0.0012 0.034 15.2 1.8 1 23 368 390 368 390 0.98 8 11 2.9e-06 8.1e-05 23.4 1.0 3 23 401 421 400 421 0.99 9 11 0.00014 0.0039 18.1 1.1 1 23 427 449 427 449 0.98 10 11 0.00035 0.0096 16.9 3.4 1 23 455 477 455 477 0.98 11 11 2.2e-06 6.2e-05 23.8 2.3 1 23 483 505 483 505 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAGCCAGATTTCTCTAAAACATGTCGAACATGTTTAAAGCAACCAAAGTTGGTTATAAATTCTGTTTTCACTCCAAACATTTTAGAAATGATTACTGCTTGTACAACTATTAAGGTAACTAAATGCGACGGATTGCCCGAATATATTTGCGACAAATGTCTCAAAAACGTCACAATTGCCTacgattttaagtttttatcagAAAAATCGGATTCGTTACTTCGTAAAATGGTTGAAGACAGTAAAGTAGATGACAGTAACGGTATTAAATTAGAATCTGAGGATACGTGTGATAGCGATGACTATaaagattgttttaaaaatgaagatGATTTTCTCGAAGCCAAACCGAATTCACCTCAAGAATGCAAAAATGAAGAATTGGGAGACGATCTTAAAAATGTCGACAGCGATAAATCGAACGATTCGTTTTCCAAACGGGACGAAGAAAATAGAATATCTGAATCTGAAAACAGTAACGATAAAAAAAGTGATAATATTTGCGTCGTATGTAAGAAAGAATTGTGTAATAAACGCTCGTTGAAGAAACACATGAACACGCATCCTGAGTATCGAACCAAATGCGTGTTTTGTCCGGTTTGCAGTAAAGTTTTCTTCGACGACTCGCGATTAAAATCGCATATGTCGAGGCACGACGGCGACAAGAAATTCAATTGTGATTATTGTGATAAAGAATACTACGAAATGAACGCGCtcataattcatttgaaaagaaaacataCAGTCGAGCCTGTGAAGTGTAAATTGTGTCagaaaaagtttattttgcAAGTGCAGTTGAATGCGCATATGAAAACTCACAAAGAACGAAAGTTTATCTGCGAAGCGTGCGGAAAAGAGTGTAAAACTCAGACTTTACTCAGCAGTCACAAACTTAGACATACCGAACGAGTACGAATTCCGTGCCCGCAGTGCGATTCGTCGTTTTTGTGCAAATATACGATGAGAAAACATGTGAAAGCGTTTCATCAAGGGTTgcaaaggaaatatatttgcagTGTTTGCGGTAAAGAGTCGACGAGCGCAACAAATCTCAAGGTCCACATGTTAAGAATTCACGCGGAACACAGACCGTATAAATGTTCGGAGTGCCAGTTATCGTTTGCTTCGGAATCGTTTCTTCATATTCACTCTAAAGTCCACAGCGGCGAGTCGTTACCGTATAGAAAACTCTGTACTATTTGCGGAAAGAAATTTCAGAGTTCGACTGGTCTACGCGTTCACATGAGAACGCATACAGgggAGAAGCCATATGCGTGTTCAATGTGTGAAAAACGGTACAGAACGATATCGGCCCTTTCTAGTCATAAGCGAACCCACACGGGCGAGAGACCTCACGAATGCCCCATCTGTCACAAAAGGTTCTTCACCTCGGCTGTTGTCAAAGAACACCAACGAACACACACGGGGGAAAAACCATACCAGTGCGAAATTTGTAGTCAAAGTTTCAGTCAGAAGTCTACATTGAGAACGCAcaagaaaatacattaa
- Protein Sequence
- MEKPDFSKTCRTCLKQPKLVINSVFTPNILEMITACTTIKVTKCDGLPEYICDKCLKNVTIAYDFKFLSEKSDSLLRKMVEDSKVDDSNGIKLESEDTCDSDDYKDCFKNEDDFLEAKPNSPQECKNEELGDDLKNVDSDKSNDSFSKRDEENRISESENSNDKKSDNICVVCKKELCNKRSLKKHMNTHPEYRTKCVFCPVCSKVFFDDSRLKSHMSRHDGDKKFNCDYCDKEYYEMNALIIHLKRKHTVEPVKCKLCQKKFILQVQLNAHMKTHKERKFICEACGKECKTQTLLSSHKLRHTERVRIPCPQCDSSFLCKYTMRKHVKAFHQGLQRKYICSVCGKESTSATNLKVHMLRIHAEHRPYKCSECQLSFASESFLHIHSKVHSGESLPYRKLCTICGKKFQSSTGLRVHMRTHTGEKPYACSMCEKRYRTISALSSHKRTHTGERPHECPICHKRFFTSAVVKEHQRTHTGEKPYQCEICSQSFSQKSTLRTHKKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530921;
- 90% Identity
- iTF_01530921;
- 80% Identity
- -