Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000043.1:114461-118493[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00035 0.0096 16.9 0.5 1 23 150 172 150 172 0.94

2 15 0.019 0.53 11.4 1.7 3 23 180 200 179 200 0.99

3 15 0.00041 0.011 16.7 0.1 1 23 313 335 313 335 0.98

4 15 0.64 18 6.6 0.1 1 23 341 364 341 364 0.96

5 15 0.0043 0.12 13.5 4.3 1 23 391 413 391 413 0.96

6 15 0.35 9.6 7.4 0.0 1 23 426 448 426 448 0.95

7 15 0.033 0.9 10.7 0.4 1 22 454 475 454 477 0.89

8 15 0.072 2 9.6 1.9 3 19 486 502 485 503 0.95

9 15 5.1e-05 0.0014 19.5 3.1 1 23 512 534 512 534 0.96

10 15 0.011 0.31 12.1 0.4 2 23 540 561 539 561 0.97

11 15 3.4e-05 0.00094 20.1 0.4 1 23 569 591 569 591 0.98

12 15 0.0027 0.075 14.1 0.2 1 23 597 619 597 619 0.97

13 15 0.00047 0.013 16.5 0.3 1 23 625 647 625 648 0.95

14 15 1.1 31 5.8 0.6 1 23 662 684 662 684 0.95

15 15 7.1e-05 0.0019 19.1 0.4 1 23 1074 1096 1074 1096 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00035	0.0096	16.9	0.5	1	23	150	172	150	172	0.94
2	15	0.019	0.53	11.4	1.7	3	23	180	200	179	200	0.99
3	15	0.00041	0.011	16.7	0.1	1	23	313	335	313	335	0.98
4	15	0.64	18	6.6	0.1	1	23	341	364	341	364	0.96
5	15	0.0043	0.12	13.5	4.3	1	23	391	413	391	413	0.96
6	15	0.35	9.6	7.4	0.0	1	23	426	448	426	448	0.95
7	15	0.033	0.9	10.7	0.4	1	22	454	475	454	477	0.89
8	15	0.072	2	9.6	1.9	3	19	486	502	485	503	0.95
9	15	5.1e-05	0.0014	19.5	3.1	1	23	512	534	512	534	0.96
10	15	0.011	0.31	12.1	0.4	2	23	540	561	539	561	0.97
11	15	3.4e-05	0.00094	20.1	0.4	1	23	569	591	569	591	0.98
12	15	0.0027	0.075	14.1	0.2	1	23	597	619	597	619	0.97
13	15	0.00047	0.013	16.5	0.3	1	23	625	647	625	648	0.95
14	15	1.1	31	5.8	0.6	1	23	662	684	662	684	0.95
15	15	7.1e-05	0.0019	19.1	0.4	1	23	1074	1096	1074	1096	0.98

Sequence Information

Coding Sequence: ATGGAAGAAGGCTTTCATTTGAATTGGGACGAAGGTCCGACCGTTTCACATCGGGAAGAAGTAATTGGCGGGGTTGATGGAGCATCGAATTCAGAATACGTTTGCGAAGAAGTGGTGGTGGGCTCAGAAACTGTTGTAACCGAGCAGATTATACAGGATCATGATCAAACGGCACAAAACATCGTTTATATGCCATCGGGCGCTGGCAATATCGTTTACATGACACAGAATAATGTAGTTGTTTTACAACAAGAAGATCAAAGTATTATCCCGGAACAAGCGTACATGGAATGTCAGGTCACCGAAGAAGTTGTCACCGACGATTGGGTACAACCCCAAGGCGATGAAAGAGTGGAAATAATAGGCGGTACAGAAGGTGAACAGAATGAAGAAGATGTTGAGATTCCATTACCGACAGATCAAGATGAAAATATAACAAGTAGACCATATCCTTGTGATTTTTGCAGTCGCAGATTCCGGAAAAAGGCAAATTTAATCAACCATTTAGTAGCTCATCAAACAGATAGACCTCACGGATGTAATTTGTGCGGTTCCCGTTACATTCGCAAATGCGATTTGATGAACCATCTCAAGATTCACGCTTACGTACCTGAAACAGATGATTTGGATGATGATGATATGAATTTTCCTTTAGAACCAGAACCGGAGCCtgaaaaaacttacaaaaagaAATCAGGTTCTAAAAAACACAAGgggacaaaaataaaaatcaaagatgaaatcgAAGAAGAAAAATATTCATCCGTATCTCGTTCGTACGATTACGTCGATGAAGATATGAGGCTGCTTTCAGAAATGGCGCATCAGAGTGCCACTCGAGTAGCTTACGAGAGCATGGATTATTCCGACATGATACCCCCTGAAAATCACCCGGTCAGCGAACCGAGGTATCCGATCACAGATCCTCGTAAGCCGTTTGTATGCCAACACTGCGGTGTTGGTTTCGCGAGAGAAAAAGCGCTCGCTTCGCACGCTCGAATTCATGGGGGGGACAGTCCCTTTGAATGTGAAACGTGTGGAGACATGTTTTGGGACTTAGCGCTATTACGAGAACACGTGCGTAATAAACATAGTGATTTGGCGGGAAATTTGTCTTATGACGACGACGAGGACGAAGATTATGTTGAAGATGATGACAAATACGGTGATTTCTTTTGCCAAACGTGCGGAATGATTTTCCATAGAAAATATCTATTGAGACGCCATTCGAAGATTCACATCAAAGAAGAGTACGTTAACGAATCCGAGTTCGGACACGTGTGTAACGTTTGCGGAGATTCCTTTCCGGAAGCCCTAGACTTGTTGGCTCACGCCGAAGTCCACGCTAGATTAGACGTGCATCGCTGTATGCAGTGTGGAGAAAGTTTCAGCGAAGAACAACTTTTAGCGAACCACGTAGGCCAACGCCATTCAAAGACGATGGCGCCCAATTCCTGCATGTTATGCGGCAAAACTTGCAAAGATAGACGTACGCTGATGAAACATTCTTGGGAACATTCACGTGAGAAATCATTTGCGTGCAGTAAATGCGGCAAAAGTTTCCATAACAAAGCGCGCCTTAAACGACACATGGTTTCCCATCGTAACAAAGCGGTTACTTGCAACGTTTGCGGAGAAGATTTCCCAGATGGAAGATCGTTGATGAACCATAGACATAGCCATAATAATTTAGCCGGTAGACAGTTTCCATGTCGCGAGTGCGGTAAGACGTTTGGATCGCGCAGTTCTCAGCAGATCCACATTCGAATTCATACGGGAGAACGACCTTACGCTTGCCGGTTTTGTTGGAAGGCCTTTGCCGACGGAGGTACCCTTCGTAAACACGAACGCATCCATACAGGGGAGAAACCTTACGCCTGCGCCGTGTGTCCTCGCGCCTTTAACCAACGCGTCGTTCTACGCGAACACATACGCTCTCATCATTCAGGACCGGACCCCAAATACGGGACCTCGATGACCCCGTATTGCTGCGCGGTGTGTAGTGACTTGTTTTCGACTTCGCAGGATCTTATTCTGCATTTGATCCAACATTGTGATATGAACACAGCGATGAAAAGACAACCGCAAGTTGGCCCGCGGAAATATAAGCGCCGCAGAAAACTCAAACCCCATGAGTTGGAACGCATCTCCAACAGATTAGACGTGGACGATGAGCCTGCGTCAGAATCCGACGACAACAGCAAGAGAAAACTtggaaagaaaaacaaaaaggtCAAATCCGTTTGCGATGACAATTTGGAATCTGTTATGCAAGGGTTTGAAAATACGATGAAAAGTATAAATACGATTGTTAATTCTCAGAAAAGTACGAGGGGTAGGAAAAAGAAACAGCCGTTGCCATTGAACGATCAGAATTCCATGTCGTCTAGACCGAAGATGATTCATACGCAGAAAACCAAAGTTGCCGTCGAAGTTAGCGATGGGAGTAAAGTACGACATaaaactaaaactttaataactaggACGACTCCAGCCGTTATGTCGACGAACAATGTGCATCCGGAGCCTGTGAAAGTTGTAAACAATAATGAACGTGAGAGAAACACTGAAAGAAACCGACCCCGGACTAAAAATGTCAGTTACCACGTTCTTCAACCGGAAAAATATCAGGTAGCTACGTTTGGATCTGAAGACGTTGAACAAAGCAACATGGAGTTGCTTGACGAACAAGACGATAGGAATATCACGATAAAAAATGAGCCGATCAATATAAAAAGAGAGAACGCGGTCGATTTCAACGAAGATTTGTATTCGGGTGTCGCTAACAACGTCGTGGTTAACGATTGTCCGTCGGTACATTTCGACGTCGcccaaaatattgaaatcggTGAAACGGTGCCAGAAGCTGAGAACGAAGTGTGTGTCGGTGAAGACGATCAAATAGAAGaagataaaaatgttaatttcaaagTAGAAGTGTCGAAGGAATCACAAAGTGTTAGACCGGTCGCTTTGAATATCGTCaaagttgtcaaaaaatcaaatGCAGTTAAGTCTTACAATTCTCGACAAATATTAGGGccaggaaataaaataatacatattttgaaagcTCCTGAAATCGATACTCCTAACGAATCTATCGTACCGGAATCTTTAATTCAGGCGCACCAACAGCAGTCAGTAAAAATGGAACCGATAGATGCCACTTCATTGCACGAACTGGCTGAACTATCGATGCAACATGCACAAAACAAGTTTAAATGTGAAATGTGCAGTGAAACTTTTTCTGATCGAGGACAGCTGTTGTTACATGTTAAAATCCATATCTAA
Protein Sequence: MEEGFHLNWDEGPTVSHREEVIGGVDGASNSEYVCEEVVVGSETVVTEQIIQDHDQTAQNIVYMPSGAGNIVYMTQNNVVVLQQEDQSIIPEQAYMECQVTEEVVTDDWVQPQGDERVEIIGGTEGEQNEEDVEIPLPTDQDENITSRPYPCDFCSRRFRKKANLINHLVAHQTDRPHGCNLCGSRYIRKCDLMNHLKIHAYVPETDDLDDDDMNFPLEPEPEPEKTYKKKSGSKKHKGTKIKIKDEIEEEKYSSVSRSYDYVDEDMRLLSEMAHQSATRVAYESMDYSDMIPPENHPVSEPRYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECETCGDMFWDLALLREHVRNKHSDLAGNLSYDDDEDEDYVEDDDKYGDFFCQTCGMIFHRKYLLRRHSKIHIKEEYVNESEFGHVCNVCGDSFPEALDLLAHAEVHARLDVHRCMQCGESFSEEQLLANHVGQRHSKTMAPNSCMLCGKTCKDRRTLMKHSWEHSREKSFACSKCGKSFHNKARLKRHMVSHRNKAVTCNVCGEDFPDGRSLMNHRHSHNNLAGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYGTSMTPYCCAVCSDLFSTSQDLILHLIQHCDMNTAMKRQPQVGPRKYKRRRKLKPHELERISNRLDVDDEPASESDDNSKRKLGKKNKKVKSVCDDNLESVMQGFENTMKSINTIVNSQKSTRGRKKKQPLPLNDQNSMSSRPKMIHTQKTKVAVEVSDGSKVRHKTKTLITRTTPAVMSTNNVHPEPVKVVNNNERERNTERNRPRTKNVSYHVLQPEKYQVATFGSEDVEQSNMELLDEQDDRNITIKNEPINIKRENAVDFNEDLYSGVANNVVVNDCPSVHFDVAQNIEIGETVPEAENEVCVGEDDQIEEDKNVNFKVEVSKESQSVRPVALNIVKVVKKSNAVKSYNSRQILGPGNKIIHILKAPEIDTPNESIVPESLIQAHQQQSVKMEPIDATSLHELAELSMQHAQNKFKCEMCSETFSDRGQLLLHVKIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530887;
90% Identity: iTF_01530887;
80% Identity: -