Vnig004538.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000008.1:7434981-7450637[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.52 14 6.9 0.3 2 19 152 169 151 173 0.92
2 26 1.8e-05 0.0005 20.9 1.3 1 23 179 201 179 201 0.98
3 26 1.3e-05 0.00036 21.4 0.7 3 23 209 229 207 229 0.96
4 26 0.00076 0.021 15.8 0.5 1 17 235 251 235 253 0.93
5 26 0.00058 0.016 16.2 3.5 1 23 263 285 263 285 0.98
6 26 5.7e-05 0.0016 19.4 3.6 1 23 291 313 291 313 0.98
7 26 1.1e-06 3e-05 24.8 1.3 1 23 319 341 319 341 0.99
8 26 1.2e-05 0.00033 21.5 4.6 2 23 507 528 506 528 0.98
9 26 0.0014 0.039 15.0 1.4 1 23 534 556 534 556 0.97
10 26 0.00045 0.012 16.5 0.0 3 23 563 583 562 583 0.97
11 26 0.00031 0.0086 17.0 3.1 3 23 591 611 589 611 0.96
12 26 5e-06 0.00014 22.7 0.1 1 20 617 636 617 639 0.93
13 26 1.4e-06 3.8e-05 24.4 1.1 1 23 645 667 645 667 0.98
14 26 0.0003 0.0083 17.1 0.5 1 23 673 695 673 695 0.94
15 26 1.1e-06 3.1e-05 24.7 1.2 1 23 701 723 701 723 0.99
16 26 1.9 52 5.1 0.1 1 12 729 740 729 742 0.87
17 26 2.7e-05 0.00074 20.4 2.0 1 23 888 910 888 910 0.97
18 26 0.00037 0.01 16.8 5.0 1 23 916 938 916 938 0.99
19 26 0.003 0.083 13.9 0.7 2 23 941 963 940 963 0.96
20 26 5.9e-05 0.0016 19.3 2.0 1 23 969 991 969 991 0.98
21 26 1.5e-05 0.00043 21.1 0.3 3 23 999 1019 997 1019 0.96
22 26 3e-05 0.00083 20.2 0.6 1 23 1025 1047 1025 1047 0.96
23 26 1.3e-05 0.00036 21.4 0.7 1 23 1053 1075 1053 1075 0.97
24 26 0.0013 0.037 15.0 0.4 1 23 1081 1103 1081 1103 0.96
25 26 5.9e-06 0.00016 22.5 2.1 1 23 1109 1131 1109 1131 0.98
26 26 0.0018 0.049 14.6 7.2 1 23 1137 1159 1137 1159 0.98

Sequence Information

Coding Sequence
ATGAATACGGTAAAAAAGGATGATATTTGCCGAACATGTTTGAGTAAAGATAAGGAATCGCTAACTTCGATTTTCTGTCTTGAACATGTCGATTCAAACCTTTTGACTGTGTCGGATATGTTAACGGAGTGTACCACTGTACATGTCGACAGTGACGACGTTCTCCCGAAAATGATTTGCGAAACTTGTAAAGAACGAGTAAGATACTGCTATGAATTTCGAAAACAGTGTTTTGAGTCAGAACAAAAATTACTTTCGTTATGTCGTGACATCGACAGTGAAGCtgataatataaaaacagaatTGAAGGTCGAACTGAATGACGAAATTACAGAACAACAAGACGACTTAGATTTTAGCGATGTAGATATCAAACCAGATTTTTCAACCGAAGACAATAATGCTGAAAGTTTTGAGTGGGCATTGAAAAATCATTTGATGACACACAAAATCGTTTGTAAGGTTTGTTTTATGGAATTTGAACGACGCGACGAATTGGATAACCATTTTCCTAAACACAAAGATCATCTGCCCTTCGTTTGTAAGGAATGCGGAAAGCAGTTTGAAAAGAAACGACAGCTTGTTTTACATTTAAAGACTCATACCGGAGAACGAAACCATTTGTGTACGATTTGTGGTAAATCGTTTGCGTTGGCTGGGAACTTGAGTACGCATTTACGAACGCATTCCGGAGAAAAACCCTACATTTGTAAAACTTGTGGTAAAGCGTTTTCTCAATGGAGTTCGTTAAGGTTTCACGACGCTCAACACAATTCGGAACGTTCATTTGTTTGTCAAACATGCGGCAATGCGTACAAACATAGAACGGTGCTTAAAAGACATATGAGGAAGCACACGGGGGAACGGAACTACGCCTGCACGTACTGTGATAAGAGATTTTATgaatcaaaacatttgaataacCATCTTCTAACGCATACAGGAGAGAAGaattataaatgcgaattttGTGGCAAAGCATTCAGTCGAAACACAAATCTGTCGGTACACAGAAAAATTCATACTGGCGTCAGACCGCATGTGTGTTCCGTTTGTGaactGTGCCATAAATCGGAACAAAAACTGTTGCAGTTTACTAGTCAGTCATATTATAATGATCAACAAATCAATATCGGAGAGTTTTTACAACcaaaagttgaaattaaaaacgaaactGACGATATCGATAATGCAAATGACAGTGCAAATTGTAGTTTGCCAGACGACAACAATTCAGATTGTGATTTTAATGCCGACGATGATGTTTCGATAAAAACTAATAACGAGGTCAAATGCTCTGAAGAAAATTTAAACACAACGACTGACCCCGACTCGAAACAGAACATATTAATGTTGAAATTAAACGAGTCGAACGACTTGTCTATGAAATTAGTCCGTTTGCGTGCCAAAAATGGGAAGCAGCTAAGAAGAGaatcaaaagaaaatattaaagttttaaaaataaaatataacggtGAAgttaTCCGTGATAAAAACCAACATAAGCAAAGAAGCAAACAATGTCACGAGTGCAATAAACTGTTCAAGACTTCATCCGATTTGAATCGGCATATTAAAAGACATTGCAAAGAAACAAGTTTTCATTGTTTCATTTGTAAAAGAAGTTTTCCAGACCAATCGGAGTTGGACATTCATTCAGAAACACATGAAGGAGAAACAAATGCATGTGAAGACTGTGGTAAACAGTTTACTGAACGAGTTGATTTAGCGCAGCATTTAGAGgTGCACATCCCGGAGAAACCGCATTTGTGCACAGTTTGTGGAAGAGCATTTGCCTGTTCTTCGAACCTGAAAACCCACATGAGAATTCATAATGGCGAGAAACCGTACGTTTGCAACGTTTGCGGAAAAGCTTTTGCTCAATGGTCGTCGCTCCGTAGCCATCAGCCTGTGCATTCGgatgaaaaacattttacgTGTCCAACGTGTGGAAAAGCTTTCAGTCGAAAAAATGTACTCAGACTTCACATGAGATATCACACAGGCATAAGAAATTATCCATGTACGATGTGTGATAAGAGATTTTATGATGCtcaaatgttgaaaaaacattCGGTTGTCCATAcaggcgaaaaaaattacaagtgCGAATTCTGTGGGAAAGCATTCAATCGAAAAAGTAACTTGGACGTTCACAGAAAGATTCACACAGGTGATCGGCCCCACGTGTGCTCCGTTTGTGGCAGAGGGTTCATACAACTCCATGTTTCTTTAAACGACGAATTGCCCAAAATGTTATGTACTGATTGTACTAAGCAACTGAAAAATTACCTTAATTTTAAAACGCAATGTAAACAATCCGAACAGACGCTTATAAATTATATCCAAAAAAACGGTAATTTAATTCCTTCGCATACAGAGCtcgtaattaaaaatgaaattgaaaatattcaaataaaaaatgaagatgAACTAAGAATAAAGACCGAagatttggaaataaaaaacgaaattccTCACGAGTCCGTAACTTATTTAGAAGATCCCGGTTTTGCAACAGACGATACAGATTCCGAAAGTCGACCACTCTCggaaattgttattaaaacaaaagcgagtaataaaacaagaagaaaatttaaaagGAACAAATCGAACGTTTCGTTTAAGCGAAAACCTCCAAAAAAATCGGATGAAACATTCGATTGTACGATGTGTCACAAATCATTCACTAAAAATTCCGAACTGGCAGTTCATATAACGTCGCATTTCGGCGGCGAAGTTTATAAATGCGAAAAGTGCCGTAAAATATGCGTTACTCAGTCGAGCTACGAGAAACATTTACGACGACACGCGATTAAGTGCGAACTGTGTTTGTCGACATTCAAGGACAAATCGGAACTTGAAGCGCACAAGAAAAAGGAACACGACGGACAACTGGCGTACAACTGTAATAAATGCGGtaaacgtttcgaaaaaaaacacGGTCTCGCGATACATCTCAAAATACACGCCGGCGAGAAGAAACATTTGTGCAACGTGTGTGGAAAAGCGTTCACGTTGCCCGGGAACTTAGTAACGCATCAACGAATTCATACCGGTGAAAAACCGTACGTTTGCAGTTTCTGCAGCAAGGGCTTCACCCAGTGGAGCACCCTGCAAACGCACATTGTCAATCATACCCGAGAACGCGCGTTCGTTTGCCAGACGTGCGGAAAGACGTTTGCGAGAAAAGGAACGCTGCGAATACACAATAAGATTCATACGGGCGAAAAGAAATACGCGTGCGGCTACTGCGACAGAAAGTTTTATGCGTCGAATTCACTCACAAAACATCTTGTCGTTCATACAGgtgaaaaaaatttcaaatgtgaAACTTGCGGAAAGTCGTTTAATAGAAAAAGTACATTGGTGACGCATAATAAAATTCATACTGGAGAACGACCCCACGTTTGTTCTGTATGCGGATGTGCTTTTATACAGAAACACTGTCTTATTTCACACATGAAAACTCATCAGTAA
Protein Sequence
MNTVKKDDICRTCLSKDKESLTSIFCLEHVDSNLLTVSDMLTECTTVHVDSDDVLPKMICETCKERVRYCYEFRKQCFESEQKLLSLCRDIDSEADNIKTELKVELNDEITEQQDDLDFSDVDIKPDFSTEDNNAESFEWALKNHLMTHKIVCKVCFMEFERRDELDNHFPKHKDHLPFVCKECGKQFEKKRQLVLHLKTHTGERNHLCTICGKSFALAGNLSTHLRTHSGEKPYICKTCGKAFSQWSSLRFHDAQHNSERSFVCQTCGNAYKHRTVLKRHMRKHTGERNYACTYCDKRFYESKHLNNHLLTHTGEKNYKCEFCGKAFSRNTNLSVHRKIHTGVRPHVCSVCELCHKSEQKLLQFTSQSYYNDQQINIGEFLQPKVEIKNETDDIDNANDSANCSLPDDNNSDCDFNADDDVSIKTNNEVKCSEENLNTTTDPDSKQNILMLKLNESNDLSMKLVRLRAKNGKQLRRESKENIKVLKIKYNGEVIRDKNQHKQRSKQCHECNKLFKTSSDLNRHIKRHCKETSFHCFICKRSFPDQSELDIHSETHEGETNACEDCGKQFTERVDLAQHLEVHIPEKPHLCTVCGRAFACSSNLKTHMRIHNGEKPYVCNVCGKAFAQWSSLRSHQPVHSDEKHFTCPTCGKAFSRKNVLRLHMRYHTGIRNYPCTMCDKRFYDAQMLKKHSVVHTGEKNYKCEFCGKAFNRKSNLDVHRKIHTGDRPHVCSVCGRGFIQLHVSLNDELPKMLCTDCTKQLKNYLNFKTQCKQSEQTLINYIQKNGNLIPSHTELVIKNEIENIQIKNEDELRIKTEDLEIKNEIPHESVTYLEDPGFATDDTDSESRPLSEIVIKTKASNKTRRKFKRNKSNVSFKRKPPKKSDETFDCTMCHKSFTKNSELAVHITSHFGGEVYKCEKCRKICVTQSSYEKHLRRHAIKCELCLSTFKDKSELEAHKKKEHDGQLAYNCNKCGKRFEKKHGLAIHLKIHAGEKKHLCNVCGKAFTLPGNLVTHQRIHTGEKPYVCSFCSKGFTQWSTLQTHIVNHTRERAFVCQTCGKTFARKGTLRIHNKIHTGEKKYACGYCDRKFYASNSLTKHLVVHTGEKNFKCETCGKSFNRKSTLVTHNKIHTGERPHVCSVCGCAFIQKHCLISHMKTHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01510997;
90% Identity
iTF_01510997;
80% Identity
-