Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000039.1:21733-37222[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.53 15 6.9 0.3 2 19 152 169 151 173 0.92

2 27 1.8e-05 0.0005 20.9 1.3 1 23 179 201 179 201 0.98

3 27 1.3e-05 0.00036 21.4 0.7 3 23 209 229 207 229 0.96

4 27 0.00077 0.021 15.8 0.5 1 17 235 251 235 253 0.93

5 27 0.00058 0.016 16.2 3.5 1 23 263 285 263 285 0.98

6 27 5.7e-05 0.0016 19.4 3.6 1 23 291 313 291 313 0.98

7 27 1.1e-06 3e-05 24.8 1.3 1 23 319 341 319 341 0.99

8 27 9e-05 0.0025 18.7 1.6 1 23 347 369 347 369 0.98

9 27 1.2e-05 0.00034 21.5 4.6 2 23 513 534 512 534 0.98

10 27 0.0014 0.039 15.0 1.4 1 23 540 562 540 562 0.97

11 27 0.00045 0.012 16.5 0.0 3 23 569 589 568 589 0.97

12 27 0.00032 0.0087 17.0 3.1 3 23 597 617 595 617 0.96

13 27 5.1e-06 0.00014 22.7 0.1 1 20 623 642 623 645 0.93

14 27 3.1e-06 8.6e-05 23.3 0.6 1 23 651 673 651 673 0.97

15 27 0.0003 0.0084 17.1 0.5 1 23 679 701 679 701 0.94

16 27 1.1e-06 3.1e-05 24.7 1.2 1 23 707 729 707 729 0.99

17 27 1.9 53 5.1 0.1 1 12 735 746 735 748 0.87

18 27 2.7e-05 0.00075 20.4 2.0 1 23 894 916 894 916 0.97

19 27 0.00037 0.01 16.8 5.0 1 23 922 944 922 944 0.99

20 27 0.0031 0.084 13.9 0.7 2 23 947 969 946 969 0.96

21 27 5.9e-05 0.0016 19.3 2.0 1 23 975 997 975 997 0.98

22 27 1.6e-05 0.00043 21.1 0.3 3 23 1005 1025 1003 1025 0.96

23 27 3e-05 0.00083 20.2 0.6 1 23 1031 1053 1031 1053 0.96

24 27 1.3e-05 0.00036 21.4 0.7 1 23 1059 1081 1059 1081 0.97

25 27 0.0047 0.13 13.3 0.4 1 23 1087 1109 1087 1109 0.96

26 27 6e-06 0.00016 22.4 2.1 1 23 1115 1137 1115 1137 0.98

27 27 0.0018 0.05 14.6 7.2 1 23 1143 1165 1143 1165 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.53	15	6.9	0.3	2	19	152	169	151	173	0.92
2	27	1.8e-05	0.0005	20.9	1.3	1	23	179	201	179	201	0.98
3	27	1.3e-05	0.00036	21.4	0.7	3	23	209	229	207	229	0.96
4	27	0.00077	0.021	15.8	0.5	1	17	235	251	235	253	0.93
5	27	0.00058	0.016	16.2	3.5	1	23	263	285	263	285	0.98
6	27	5.7e-05	0.0016	19.4	3.6	1	23	291	313	291	313	0.98
7	27	1.1e-06	3e-05	24.8	1.3	1	23	319	341	319	341	0.99
8	27	9e-05	0.0025	18.7	1.6	1	23	347	369	347	369	0.98
9	27	1.2e-05	0.00034	21.5	4.6	2	23	513	534	512	534	0.98
10	27	0.0014	0.039	15.0	1.4	1	23	540	562	540	562	0.97
11	27	0.00045	0.012	16.5	0.0	3	23	569	589	568	589	0.97
12	27	0.00032	0.0087	17.0	3.1	3	23	597	617	595	617	0.96
13	27	5.1e-06	0.00014	22.7	0.1	1	20	623	642	623	645	0.93
14	27	3.1e-06	8.6e-05	23.3	0.6	1	23	651	673	651	673	0.97
15	27	0.0003	0.0084	17.1	0.5	1	23	679	701	679	701	0.94
16	27	1.1e-06	3.1e-05	24.7	1.2	1	23	707	729	707	729	0.99
17	27	1.9	53	5.1	0.1	1	12	735	746	735	748	0.87
18	27	2.7e-05	0.00075	20.4	2.0	1	23	894	916	894	916	0.97
19	27	0.00037	0.01	16.8	5.0	1	23	922	944	922	944	0.99
20	27	0.0031	0.084	13.9	0.7	2	23	947	969	946	969	0.96
21	27	5.9e-05	0.0016	19.3	2.0	1	23	975	997	975	997	0.98
22	27	1.6e-05	0.00043	21.1	0.3	3	23	1005	1025	1003	1025	0.96
23	27	3e-05	0.00083	20.2	0.6	1	23	1031	1053	1031	1053	0.96
24	27	1.3e-05	0.00036	21.4	0.7	1	23	1059	1081	1059	1081	0.97
25	27	0.0047	0.13	13.3	0.4	1	23	1087	1109	1087	1109	0.96
26	27	6e-06	0.00016	22.4	2.1	1	23	1115	1137	1115	1137	0.98
27	27	0.0018	0.05	14.6	7.2	1	23	1143	1165	1143	1165	0.98

Sequence Information

Coding Sequence: ATGAATACGGTAAAAAAGGATGATATTTGCCGAACATGTTTGAGTAAAGATAAGGAATCGCTAACTTCGATTTTCTGTCTTGAACATGTCGATTCAAACCTTTTGACTGTGTCGGATATGTTAACGGAGTGTACCACTGTACATGTCGACAGTGACGACGTTCTCCCGAAAATGATTTGCGAAACTTGTAAAGAACGAGTAAGATACTGCTATGAATTTCGAAAACAGTGTTTTGAGTCAGAACAAAAATTACTTTCGTTATGTCGTGACATCGACAGTGAAGCtgataatataaaaacagaatTGAAGGTCGAACTGAATGACGAAATTACAGAACAACAAGACGACTTAGATTTTAGCGATGTAGATATCAAACCAGATTTTTCAACCGAAGACAATAATGCTGAAAGTTTTGAGTGGGCATTGAAAAATCATTTGATGACACACAAAATCGTTTGTAAGGTTTGTTTTATGGAATTTGAACGACGCGACGAATTGGATAACCATTTTCCTAAACACAAAGATCATCTGCCCTTCGTTTGTAAGGAATGCGGAAAGCAGTTTGAAAAGAAACGACAGCTTGTTTTACATTTAAAGACTCATACCGGAGAACGAAACCATTTGTGTACGATTTGTGGTAAATCGTTTGCGTTGGCTGGGAACTTGAGTACGCATTTACGAACGCATTCCGGAGAAAAACCCTACATTTGTAAAACTTGTGGTAAAGCGTTTTCTCAATGGAGTTCGTTAAGGTTTCACGACGCTCAACACAATTCGGAACGTTCATTTGTTTGTCAAACATGCGGCAATGCGTACAAACATAGAACGGTGCTTAAAAGACATATGAGGAAGCACACGGGGGAACGGAACTACGCCTGCACGTACTGTGATAAGAGATTTTATgaatcaaaacatttgaataacCATCTTCTAACGCATACAGGAGAGAAGaattataaatgcgaattttGTGGCAAAGCATTCAGTCGAAACACAAATCTGTCGGTACACAGAAAAATTCATACTGGCGTCAGACCGCATGTGTGTTCCGTTTGTGGTAAAGGATTTATTCAGCTTCATGTTCTGAACAGTCACATGAACACTCATGTCTTTACTAGTCAGTCATATTATAATGATCAACAAATCAATATCGGAGAGTTTTTACAACcaaaagttgaaattaaaaacgaaactGACGATATCGATAATGCAAATGACAGTGCAAATTGTAGTTTGCCAGACGACAACAATTCAGATTGTGATTTTAATGCCGACGATGATGTTTCGATAAAAACTAATAACGAGGTCAAATGCTCTGAAGAAAATTTAAACACAACGACTGACCCCGACTCGAAACAGAACATATTAATGTTGAAATTAAACGAGTCGAACGACTTGTCTATGAAATTAGTCCGTTTGCGTGCCAAAAATGGGAAGCAGCTAAGAAGAGaatcaaaagaaaatattaaagttttaaaaataaaatataacggtGAAgttaTCCGTGATAAAAACCAACATAAGCAAAGAAGCAAACAATGTCACGAGTGCAATAAACTGTTCAAGACTTCATCCGATTTGAATCGGCATATTAAAAGACATTGCAAAGAAACAAGTTTTCATTGTTTCATTTGTAAAAGAAGTTTTCCAGACCAATCGGAGTTGGACATTCATTCAGAAACACATGAAGGAGAAACAAATGCATGTGAAGACTGTGGTAAACAGTTTACTGAACGAGTTGATTTAGCGCAGCATTTAGAGgTGCACATCCCGGAGAAACCGCATTTGTGTACAGTTTGTGGAAGAGCATTTGCCTGTTCTTCGAACCTGAAAACCCACATGAGAATTCATAATGGCGAGAAACCGTACGTTTGCAACGTTTGCGGAAAAGCTTTTGCTCAATGGTCGTCGCTCCGTAGCCATCAGCCTGTGCATTCGGATGAAAAACATTTTGCGTGTCCAACGTGTGGAAAAGCTTTCAGTCGAAAAAATGTACTCAGACTTCACATGAGATATCACACAGGCATAAGAAATTATCCATGTACGATGTGTGATAAGAGATTTTATGATGCtcaaatgttgaaaaaacattCGGTTGTCCATAcaggcgaaaaaaattacaagtgCGAATTCTGTGGGAAAGCATTCAATCGAAAAAGTAACTTGGACGTTCACAGAAAGATTCACACAGGTGATCGGCCCCACGTGTGCTCCGTTTGTGGCAGAGGGTTCATACAACTCCATGTTTCTTTAAACGACGAATTGCCCAAAATGTTATGTACTGATTGTACTAAGCAACTGAAAAATTACCTTAATTTTAAAACGCAATGTAAACAATCCGAACAGACGCTTATAAATTATATCCAAAAAAACGGTAATTTAATTCCTTCGCATACAGAGCtcgtaattaaaaatgaaattgaaaatattcaaataaaaaatgaagatgAACTAAGAATAAAGACCGAagatttggaaataaaaaacgaaattccTCACGAGTCCGTAACTTATTTAGAAGATCCCGGTTTTGCAACAGACGATACAGATTCCGAAAGTCGACCACTCTCggaaattgttattaaaacaaaagcgagtaataaaacaagaagaaaatttaaaagGAACAAATCGAACGTTTCGTTTAAGCGAAAACCTCCAAAAAAATCGGATGAAACATTCGATTGTACGATGTGTCACAAATCATTCACAAAAAATTCCGAACTGGCAGTTCACATAACGTCGCATTTCGGCGGCGAAGTTTATAAATGCGAAAAGTGCCGTAAAATATGCGTTACTCAGTCGAGCTACGAGAAACATTTACGACGACACGCGATTAAGTGCGAACTGTGTTTGTCGACATTCAAGGACAAATCGGAACTTGAAGCGCACAAGAAAAAGGAACACGACGGACAACTGGCGTACAACTGTAATAAATGCGGtaaacgtttcgaaaaaaaacacGGTCTCGCGATACATCTCAAAATACACGCCGGCGAGAAGAAACATTTGTGCAACGTATGCGGAAAAGCGTTCACGTTGCCCGGGAACTTAGTAACGCATCAACGAattcatactggtgaaaaaccgtaCGTTTGCAGTTTCTGCAGCAAGGGCTTCACCCAGTGGAGCACCCTGCAAACGCATATCGTCAATCATACCCGAGAACGCGCGTTCGTTTGCCAGACGTGCGGAAAGACGTTTGCGAGAAAAGGAACGCTGCGAATACACAATAAGATTCATACGGGCGAAAAGAAATACGCGTGCGGCTACTGCGAGAGAAAGTTTTATGCGTCAAATTCACTCACAAAACATCTTGTCGTTCATACAGgtgaaaaaaatttcaaatgtgaAACTTGCGGAAAGTCCTTTAATAGAAAAAGTACATTGGTGACGCATAATAAAATTCATACTGGAGAACGACCCCACGTTTGTTCTGTATGCGGATGTGCTTTTATACAGAAACACTGTCTTATTTCACACATGAAAACTCATCAGTAA
Protein Sequence: MNTVKKDDICRTCLSKDKESLTSIFCLEHVDSNLLTVSDMLTECTTVHVDSDDVLPKMICETCKERVRYCYEFRKQCFESEQKLLSLCRDIDSEADNIKTELKVELNDEITEQQDDLDFSDVDIKPDFSTEDNNAESFEWALKNHLMTHKIVCKVCFMEFERRDELDNHFPKHKDHLPFVCKECGKQFEKKRQLVLHLKTHTGERNHLCTICGKSFALAGNLSTHLRTHSGEKPYICKTCGKAFSQWSSLRFHDAQHNSERSFVCQTCGNAYKHRTVLKRHMRKHTGERNYACTYCDKRFYESKHLNNHLLTHTGEKNYKCEFCGKAFSRNTNLSVHRKIHTGVRPHVCSVCGKGFIQLHVLNSHMNTHVFTSQSYYNDQQINIGEFLQPKVEIKNETDDIDNANDSANCSLPDDNNSDCDFNADDDVSIKTNNEVKCSEENLNTTTDPDSKQNILMLKLNESNDLSMKLVRLRAKNGKQLRRESKENIKVLKIKYNGEVIRDKNQHKQRSKQCHECNKLFKTSSDLNRHIKRHCKETSFHCFICKRSFPDQSELDIHSETHEGETNACEDCGKQFTERVDLAQHLEVHIPEKPHLCTVCGRAFACSSNLKTHMRIHNGEKPYVCNVCGKAFAQWSSLRSHQPVHSDEKHFACPTCGKAFSRKNVLRLHMRYHTGIRNYPCTMCDKRFYDAQMLKKHSVVHTGEKNYKCEFCGKAFNRKSNLDVHRKIHTGDRPHVCSVCGRGFIQLHVSLNDELPKMLCTDCTKQLKNYLNFKTQCKQSEQTLINYIQKNGNLIPSHTELVIKNEIENIQIKNEDELRIKTEDLEIKNEIPHESVTYLEDPGFATDDTDSESRPLSEIVIKTKASNKTRRKFKRNKSNVSFKRKPPKKSDETFDCTMCHKSFTKNSELAVHITSHFGGEVYKCEKCRKICVTQSSYEKHLRRHAIKCELCLSTFKDKSELEAHKKKEHDGQLAYNCNKCGKRFEKKHGLAIHLKIHAGEKKHLCNVCGKAFTLPGNLVTHQRIHTGEKPYVCSFCSKGFTQWSTLQTHIVNHTRERAFVCQTCGKTFARKGTLRIHNKIHTGEKKYACGYCERKFYASNSLTKHLVVHTGEKNFKCETCGKSFNRKSTLVTHNKIHTGERPHVCSVCGCAFIQKHCLISHMKTHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511002;
90% Identity: iTF_01511002;
80% Identity: -