Vnig000923.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000002.1:4658819-4666168[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.16 4.5 8.5 7.7 1 21 39 59 39 61 0.95
2 40 0.0038 0.1 13.6 0.4 1 23 67 90 67 90 0.96
3 40 1.6 45 5.3 4.0 1 23 96 118 96 118 0.95
4 40 0.013 0.37 11.9 1.7 1 23 124 147 124 147 0.94
5 40 0.00015 0.0042 18.0 2.1 1 23 152 175 152 175 0.96
6 40 0.0016 0.043 14.8 1.8 1 23 184 206 184 206 0.98
7 40 8.9e-05 0.0024 18.8 0.7 1 23 209 231 209 231 0.96
8 40 3.9e-05 0.0011 19.9 3.5 1 23 237 259 237 259 0.98
9 40 1.4e-06 4e-05 24.4 1.1 1 23 265 287 265 287 0.99
10 40 0.041 1.1 10.4 1.7 1 20 357 376 357 377 0.95
11 40 0.00061 0.017 16.1 1.9 1 23 385 408 385 408 0.97
12 40 0.00065 0.018 16.0 5.3 1 23 414 436 414 436 0.98
13 40 0.007 0.19 12.8 1.3 1 23 442 465 442 465 0.97
14 40 0.0018 0.049 14.7 3.7 2 23 471 493 470 493 0.96
15 40 0.04 1.1 10.4 0.1 1 23 502 525 502 525 0.96
16 40 0.0013 0.035 15.1 0.5 1 23 528 550 528 550 0.97
17 40 0.00055 0.015 16.3 0.7 1 23 556 578 556 578 0.97
18 40 6.5e-07 1.8e-05 25.5 0.4 1 23 584 606 584 606 0.99
19 40 0.00015 0.0042 18.0 0.8 1 23 612 635 612 635 0.98
20 40 0.0082 0.22 12.6 3.5 1 23 773 796 773 796 0.96
21 40 0.086 2.4 9.4 3.1 1 23 803 825 803 825 0.98
22 40 0.00018 0.005 17.8 1.5 1 23 831 854 831 854 0.95
23 40 0.00062 0.017 16.1 1.0 1 23 859 882 859 882 0.97
24 40 0.0026 0.072 14.1 6.2 1 23 891 913 891 913 0.98
25 40 0.00019 0.0053 17.7 0.1 1 23 916 938 916 938 0.99
26 40 0.00017 0.0048 17.8 0.4 2 23 945 966 944 966 0.97
27 40 1.1e-05 0.00031 21.6 0.7 1 23 972 994 972 994 0.97
28 40 0.0059 0.16 13.0 2.0 1 23 1045 1067 1045 1067 0.98
29 40 0.00027 0.0075 17.2 1.4 1 23 1073 1096 1073 1096 0.97
30 40 0.0095 0.26 12.4 1.0 1 23 1102 1125 1102 1125 0.95
31 40 0.69 19 6.5 2.9 1 20 1151 1170 1151 1173 0.91
32 40 0.00026 0.0071 17.3 1.8 1 23 1179 1202 1179 1202 0.97
33 40 0.26 7.1 7.9 1.9 1 19 1209 1227 1209 1231 0.93
34 40 0.042 1.2 10.3 2.3 1 23 1237 1260 1237 1260 0.92
35 40 2.3 64 4.8 0.2 1 23 1265 1288 1265 1288 0.94
36 40 0.0015 0.041 14.9 1.4 2 23 1298 1319 1297 1319 0.96
37 40 0.0003 0.0083 17.1 0.3 1 23 1322 1344 1322 1344 0.98
38 40 0.0036 0.098 13.7 4.1 1 23 1350 1372 1350 1372 0.98
39 40 1.3e-05 0.00036 21.4 1.0 1 23 1378 1400 1378 1400 0.99
40 40 0.047 1.3 10.2 0.1 1 23 1407 1430 1407 1430 0.93

Sequence Information

Coding Sequence
aTGACTGTCTCACTTTCCAGGGATGTAACAATAAAGGAAGAACCGCTAGAGGAACACCACAATCTCGCTGCCAGTGCGGACGTCAGTGAAAAGTTCGTCAGAAGTCAAGACGGTTTTCACTGTACACAATGCGTTAAAGTATTTTCGTCTAAAACACTGTTCACTAAACATTACCGTTGTCATATTAGTTCGCGACCTTTCGCTTGCGAAATTTGCAATAAGGCTTTTAGATTTAATTGGGAagtgaatcttcataaaaagaGGGTTCACTATTCGGAAGAATGTTACACTTGCGTCGTATGTAATCGGAGATTTAAGTCGTTACAATATTGCAACTTGCATACCGACACTCATAGAAATATTTATCCTTTCAGTTGTGTTCATTGCGATAAAAAGTTTATTGGCAAAAGAGAAATGCAAGAACACATCGACAATAAACATCGTGGTGTTAGGTATCATTGCGACCTTTGCGGAAAAGCTTTCAGTTCGTCGAACAACGTCAGGCAACACAAAAGACAAATACACGATCCTAATTACGATCCGCCTAAATTCAAATGTGAAAAGTGCGATAAGGTTTGTTTGTCTCGCGGACTTTTGAATAAGCATATAAGGGCGCACCAGGGCTTCGCTTGTCACGTTTGCGGTAAAGTagtcacttcaaaaaaaagtttagaacAACACTTATTGTTGCACAGCGGTGATAAACCGTTTACTTGCGAGTCATGCGGAAAATGTTTTAGCAAGAAATCGGTTTTGAAAGTGCATCAGTTGACGCATAGTGGAGCGCGACCTTACGAATGCAAATTTTGCGGTAAACGATTTACACAGAGGAGTCCTCTGGTGATACATATGAGAAGTCATACGGGTGATAGACCCTATCCATGTAATCTTTGCGTACAAGCGATAATCAATAACTCAGTAAAGGAAGAAATCGACGACAACGAAATGGAAGAATTTGCCAACGCGGCAAAGGAGGAATTCGCGCAAAAACAAAGAGTAAAGAGACCACGACACGTCAAGCTGACGACTTCGATGATTCTGGAAGCATTTGTTCGACATCCGGACGGATTTCATTGCAAAGTGTGCTCGAAAGTCTTTCCGAATAGGAAACGGTTTACGGCTCATTACGGCTGCCATTTAAATCTCAGGCCTTACAACTGTGATCTGTGTAACAAGACGTTCAGGTACAACAGGGACGTTGTCCGTCACAAAAAGACAGTGCATTACGGTGAACGTCCGTTTACTTGCGAAGTGTGCGACAAAAAGTTCAAAACGTTACACTATTACAACATGCACAGAAATACGCACTTGAACATTTATCCGTTCAAATGCGAACATTGCGAAAAACAGTTCACGGTCAAAATCGGAATGCTCGAACACATTAACAGTCAGCACAGGGGCATTAAATTACAGTGCGAATTTTGCGAAAAATCGTTTAACTCGACGAATAATCTGCGACATCACAAGCAGCGCGTCCACGAACAGAACCAAAAGGAACCGCAATACGAATGCGAAATGTGTGGAAAAATGTGGCTGTCGCGCGGCCTGTTAAACAAACACATGAGGGGCGCGCATCAGGGTTTCGCCTGTCATATGTGTGGTAAAATTGTAACTTCGAAAAAAAGTCTCGACGAACATTTGCTAGTTCATAGCGGCGAGAAACCGTTCATATGTAAAATGTGCGGTAAAGGCTTCAATAAAAAGACTGTCTTGAAAGTACACGAGTTGACACACAGTGGGGCGCGACCCTACGAATGTACTGTGTGCGGTAAACGGTTCACACAGCGCAGTCCTCTTGTTATTCATATGCGAAGTCATAGCGGTGAAAGACCTTACCAGTGCAAGCTTTGTTCCGAGGCGTTTGTCAGTAAATCGTTGTTATCGAACCATGTTAAAAAGAGCCATAGTGTTCAGAAAGAGACCATTAAAGAAGAGGATTTGCCAGATGCGACTCACTGGATTTCTGAACTGTTAAATGAAGGAAATGCGGGCGGTAAAAGAAAACATAGACGAAAGAACGAAGATGAAAGCGATGCCGACACTTACGATTTTCAAGGTATCGTGAACGATGGAAACTCAGTTGACAAAACAAAacctaaaagaaaatatgttcGAAGAAAAGTAAAGACTGAGAACGAAGATTTCTTTGGAAATCTGCAGGCCGACGAACAaataaccgattttattaataaggTTCAAATTGAAGAGAGTTTTCTTCAGGAAGCAGACGGTTTCCGTTGCAAAACGTGCAATAAAGTCTGTCAGAAGAAAAGTCACTGTAAATTGCATTATTTGAAGCACGTCAAAATAAAACCTTTTACTTGTAATATATGTAACAAGAAATTCAAGGCGCCCGAACACGTACGGTTACATAAAAAGAACAAGCATAGCGGGACTAGAAAGATATATTGCTGCGACGTTTGCAGCTGGACGTCGATTTCCGAACATTACTACAAAGTTCACATTAACACTCATCTTAACATTTATCCGTTCGCCTGTTCAGAATGTGACAAAAAATACACGACGAAAAACTTTCTCGAAAAGCATATCGAAAGCAAACACAAAGGCATGCGATACGAATGCGACATTTGTCAAAAGACATTTGCGTTTCAGGCCGATGTGACGACGCACAAGAAACGCACCCACGATCCGACATACATACCGCCGCAATTCCAATGCGACATGTGCGATAAGATCTATCATTCGAAGACGCATCTGAAAAGACATAAAGAGAGTCATCAGGGTTTCACGTGCGAGATTTGCGGTCTGGTCGTTGCGTTCAGAACCGGTTTACAGCGTCACATGTTGACGCATACGGGCGCCAAACCGTTGACGTGTAAGTTTTGCGGAAAGAGTTTCGCCAGCAGTTCAACTCTGGGACCGCACATGAGAATACATACCGGGGAAAAACCGCACGAGTGCACGGTGTGCGGTAAACGGTTCAATCAGCGCAGTCCGCTCGTCATTCACATGAGGGGACACACGGGCGAGCGCCCTTACAAATGCACCCATTGCACCGAAGCGCGGACAAATGAAGAAATTATCAGTGCTATAAAAGAGGAAGTTAATAAGGTACAAGAATCGACTGAGATATTGTTGGACGATGAAGGTTTCGTTGAAACATCAAACGGTTTCCGTTGTaaactttgcgataaaatattCGAAGCGAAACGCTTGTGGAAAAAGCATTACCTAAAACACGTCACTGTGAAACCGTTCCCCTGCGAACTTTGTTCTAAGTCTTTCAAAACAGCATATCAAATGAACGTGCACAAAAAGAGGATGCATGACCGAACGGACATTTATGCGTGTAAACTCTGTGATTGGAAATCGCCTAATAAGCAGGACTTAGCAAAGCATCATCGAGATTCACATTTAGAAAAATCACAAAAACTCGTCATGTGCGAGGTTTATATGAACGAAGATGGTTATGTTTCAAAACCAGACGGTTTTCATTGTAAGAGTTGTGACAAGGTATTTGAGGCGAAGAATCTTTGGAGGAAACATTATTGGAAACACATCGATGTTAAACCGTTTCCTTGCGATATTTGCAGCAAAACGTTCAAATCAGAGTATCAAATGAACCAgcacaaaaagaaaatacattACGAGGAATTAAAAACGTACAGGTGCGACGTTTGTAATTGGCGATCCGCGAACAAGTCCAACTATTTGATGCACTGCGACAATCATTCGAAAAATTACCGTTTCAAATGTACATATTGCCAGCGGGCATTCTTAACTAAAACTGGTTTGACCCATCACGTCGGCATAAAACACGAAGGTAAAAGATTTCCGTGCGACGCTTGCAACAGATCGTTTTTGTGGCCGAGCGCCTTGATGAGTCATCGAAAACGAACTCACGATCCCAATTTTACCCCGCCCGAAATGATGTGCGCGGTTTGCGGTAAATTGTTTACGCGACGCAGCAGTTACATAACCCACGTTCATACGCACAAAGGTTTTCCGTGCGAGTCGTGCGGAAAAGTTATAACGACGAAGCATGGTCTCGCGCAACACTTGCGTGTGCATAGCGGCGAAAAAACGTTCACGTGCGAATTCTGCGGCAAACGCTTCAACAGGAAGCAGATATTATGCGTCCATGAGAGAACGCATACGGGGGAGAAGCCCTACGAGTGCACGGTGTGTGGGAAACGCTTCACTCAACGAACTCCTCTAATGATACACACGAGAAAGCATAGCGGCGAAAAATTGCCGTACGCGTGTCGCGTTTGCGCAGAATCGTTTGCTTCTAAGACGTTGCTCGAATCGCACGAGACCTCGTTGCATTCCGTTCAATAA
Protein Sequence
MTVSLSRDVTIKEEPLEEHHNLAASADVSEKFVRSQDGFHCTQCVKVFSSKTLFTKHYRCHISSRPFACEICNKAFRFNWEVNLHKKRVHYSEECYTCVVCNRRFKSLQYCNLHTDTHRNIYPFSCVHCDKKFIGKREMQEHIDNKHRGVRYHCDLCGKAFSSSNNVRQHKRQIHDPNYDPPKFKCEKCDKVCLSRGLLNKHIRAHQGFACHVCGKVVTSKKSLEQHLLLHSGDKPFTCESCGKCFSKKSVLKVHQLTHSGARPYECKFCGKRFTQRSPLVIHMRSHTGDRPYPCNLCVQAIINNSVKEEIDDNEMEEFANAAKEEFAQKQRVKRPRHVKLTTSMILEAFVRHPDGFHCKVCSKVFPNRKRFTAHYGCHLNLRPYNCDLCNKTFRYNRDVVRHKKTVHYGERPFTCEVCDKKFKTLHYYNMHRNTHLNIYPFKCEHCEKQFTVKIGMLEHINSQHRGIKLQCEFCEKSFNSTNNLRHHKQRVHEQNQKEPQYECEMCGKMWLSRGLLNKHMRGAHQGFACHMCGKIVTSKKSLDEHLLVHSGEKPFICKMCGKGFNKKTVLKVHELTHSGARPYECTVCGKRFTQRSPLVIHMRSHSGERPYQCKLCSEAFVSKSLLSNHVKKSHSVQKETIKEEDLPDATHWISELLNEGNAGGKRKHRRKNEDESDADTYDFQGIVNDGNSVDKTKPKRKYVRRKVKTENEDFFGNLQADEQITDFINKVQIEESFLQEADGFRCKTCNKVCQKKSHCKLHYLKHVKIKPFTCNICNKKFKAPEHVRLHKKNKHSGTRKIYCCDVCSWTSISEHYYKVHINTHLNIYPFACSECDKKYTTKNFLEKHIESKHKGMRYECDICQKTFAFQADVTTHKKRTHDPTYIPPQFQCDMCDKIYHSKTHLKRHKESHQGFTCEICGLVVAFRTGLQRHMLTHTGAKPLTCKFCGKSFASSSTLGPHMRIHTGEKPHECTVCGKRFNQRSPLVIHMRGHTGERPYKCTHCTEARTNEEIISAIKEEVNKVQESTEILLDDEGFVETSNGFRCKLCDKIFEAKRLWKKHYLKHVTVKPFPCELCSKSFKTAYQMNVHKKRMHDRTDIYACKLCDWKSPNKQDLAKHHRDSHLEKSQKLVMCEVYMNEDGYVSKPDGFHCKSCDKVFEAKNLWRKHYWKHIDVKPFPCDICSKTFKSEYQMNQHKKKIHYEELKTYRCDVCNWRSANKSNYLMHCDNHSKNYRFKCTYCQRAFLTKTGLTHHVGIKHEGKRFPCDACNRSFLWPSALMSHRKRTHDPNFTPPEMMCAVCGKLFTRRSSYITHVHTHKGFPCESCGKVITTKHGLAQHLRVHSGEKTFTCEFCGKRFNRKQILCVHERTHTGEKPYECTVCGKRFTQRTPLMIHTRKHSGEKLPYACRVCAESFASKTLLESHETSLHSVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530479;
90% Identity
iTF_01530479;
80% Identity
-