Vnig015306.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000051.1:3165496-3175491[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-116 6.5e-112 374.3 26.7 1 300 115 429 115 429 0.93 2 2 0.0042 1.1e+02 2.5 3.5 193 238 459 503 433 504 0.73
Sequence Information
- Coding Sequence
- atggacgaaacGACTGTTGTAGCTGAAAGAATATCGACTGAGTGTAGTGATAATGGGGACGGGTTTTTGTGTGCTGCTACTGTTTATGGTGACACGAACCGCAATGGTTTGAAATGCGGACAAATTTCTGCGGAGGACGTATTATCGGAACCACAACCGCGTTCAGaaCAGAGAGTAGAACAGCTCGGCGTCGGTAACGTTaataacgaaattattaatgaaactGTGAACGAAGTTTTAATGAACAATCAAAATGGCGACGAATTGTCGGATTCCGAATGCGGCGATAATGAAGACGACGAAGACTGCATCACtgattttttgggaaaatgtaGCGGCAATGCGGAAGCGAGGCTGGCAGCGAGACGGCAAGCTCGAGCCGAGGCGAGAGAAATACGGATGCGGGAATTAGAACGGCAACAACGAGAACAAGAAGAAAACGCTGATCGGGTTTACGATATGTATACAGaacCTACAACGAAAACACTGACCCCTATGACGCGCAGATccacaattttaaataatagcaGTTATCATTCGAGTAGGCGAAGCTCGGAAGATTCACTGGAAGATGGCGGTAGTTTAAGAGATGTTAGGCATGAGTTAAAGGAATTGGAAGAAAAATTTCGGAAAGCCATGATAGCGAATGCACAGTTGGATAATGATAAGGCGTCATATACTTACCAAATAGAATTATTGAAAGACAAATTGGAAGACTTAGAACAAGACCATTACCAGCTTCAAAgggaatataaacaaaaatgtagGGAACACGAACAATTGAAAAGAGTGGCGGCAAAATTGAAAGATGATTTCGCGTATTGTTCAGCTCAATTAGAAGAAAGGGATAGACTGATCGCCGAAAAGGGTTTGGTGATTGTTATTTGCGACGAGGAGAATGGCGATAGTGAAGATCAATCGACCGGAGGTGATGGCGACtctaattttgtgaaaattccGAAAAGGGCGCTTGTTAGCATGGAAAATGCTGAAGTGTTGAACAGCGTTGGACAAGGTAGTTTAGACAACAGGTTGAGGAAATTTGCAGACGAACGTCGAGAACTGCAGGATCAGGTGCGCTCGTTGCGTTTAGAACTCGAAGAGGAACGAAGTCGATCGCGGCGACGTAGGACGAGTTCTTCTGTTGCCGGTGGAACTCCCGTACACAACGGTCCCGATTCACAGCTGTTAGACGACATCGATCCGGTCGATGTACAACgGGAGGCAAACAAACAATTAGCGGACTATAGATTTAAGTTGCAAAAGGCTGAACAAGATATATCGACATTGCAAGGTGCTGTTGCTCGACTGGAGAGTCAAGTGGTGCGATACAAGGCCGCCGCGGAAGCTTCCGAGCGTGCAGAAGATGATCTTAAAGTTGAAAGGCGTAAACTTCAAAGAGAGGCACGGGAGTCACAAAGCAGAGTTGAAGAATTAGAAACAGCAAACAGTCATCTTCAGAAACGTTtagataaattgaaaaatgccAAATCAACTCTTTTGAAAGAACTTTGA
- Protein Sequence
- MDETTVVAERISTECSDNGDGFLCAATVYGDTNRNGLKCGQISAEDVLSEPQPRSEQRVEQLGVGNVNNEIINETVNEVLMNNQNGDELSDSECGDNEDDEDCITDFLGKCSGNAEARLAARRQARAEAREIRMRELERQQREQEENADRVYDMYTEPTTKTLTPMTRRSTILNNSSYHSSRRSSEDSLEDGGSLRDVRHELKELEEKFRKAMIANAQLDNDKASYTYQIELLKDKLEDLEQDHYQLQREYKQKCREHEQLKRVAAKLKDDFAYCSAQLEERDRLIAEKGLVIVICDEENGDSEDQSTGGDGDSNFVKIPKRALVSMENAEVLNSVGQGSLDNRLRKFADERRELQDQVRSLRLELEEERSRSRRRRTSSSVAGGTPVHNGPDSQLLDDIDPVDVQREANKQLADYRFKLQKAEQDISTLQGAVARLESQVVRYKAAAEASERAEDDLKVERRKLQREARESQSRVEELETANSHLQKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530196;
- 90% Identity
- iTF_01530196;
- 80% Identity
- -