Vnig016006.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- TFIP11
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000058.1:598136-606293[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-91 3.2e-87 293.2 16.1 1 275 400 671 400 671 0.97 2 2 0.016 2.1e+02 1.9 0.1 242 272 683 713 675 726 0.63
Sequence Information
- Coding Sequence
- atgaaCGAAGATGAAatggaaaaatttgaaattactgATTATGATCTCGACAATGAATTTAATACTCAAAGACCTCGTCGAAAGCTAACTAAACACCAACAAACTTATGgaATATGGGCAGATGATAGTGATAATGAGGATGATGTTCGAGACAGAAAAAAGAACCGTGCCCCAAAAGATTACTCAGCTCCGATTGGTTTCATTTCTGCTGGTGTacaaaatcaaaagaaaaaggATGATGCACCAAAAGATGAGAAAAACTCTGATCAATCTGATGATGAAGGTACAAGTAATTCACGAAGGAGATTCATGGCTAACAGTTCGAGTGAATCAGAAGATGAAAAGCCGTCATTTGGACAATCAAAAAAAGTTAGAGATTTTGTACTATATTCAGAAACAACTGGGGAAATAGCTGGATTAAGGAAAAGTGGCAAAGCTCCATTAAATCCTGCATTAATTGATAGAGGCGTTGGTAACTGGGAGAAACATACAAAGGGAATTGGGGCAAAATTACTTCTTCAGATGGGGTATCAACCGGGTAAAGGGCTAGGTAAAGACTTGCAAGGTATATCCGCACCAGTTGAAGCACATTTGCGTAAGGGAAGAGGAGCGATTGGAGCATATGGACCTGAAAAAAAGACATCACTTGCTGATAaaGGAAAAAAACACGATTCAGGGGATGAAAGCGATACGAGAGAAAAACAGAATAAATGGAAAAAGGGGGATAAAAAACCAATCAAATCtcggtattattataaaagcgtagatGATGTAATTGAAAGAGGTAAACAACCGGGAGCTATTCGAACAGCAGAAGTTATAAGcgaATTGAGCAAAGTTAAAGTAATTGATATGACTGGACCGGAACAGCGAATTCTAAGTGGCTATCATGCACTCAGTGGACCTAAGAAACCACCTGGTGGAGGCGAACTTTATGAAGACGTCATACATAAACAGTGTGCCAATTTCGCCTTGCCAGAATTGCAGCATAACTTGGATTTGTTAGTCGACTCTTGTGAACAGGAAATTGTTTGGATTGATCGCGAAAAAAGACACGTTTCAGATCGAATGGTTGCTCTAGAGCAAGAGCGATCTTCATTGTATGACGTggttacaaaagaaaaaaagcaaatagACATACTTCAAAATGTATTAGATATAGTGTCTCGAATAATGGATCCATCGCATGCTCTCTCTCTTAGACAAGTCGCTGAAGCTTTTAAAGAGTTACAGGAAAATTATTACGAAGAGTATCTCATGCACGATTTAGCAGAACTAGCTCCAGGCATAGTAGGACCTTTGATCACATCAGTTCTTGTAAGTTGGTCCCCGTTGGTCGCTCCAGAGCAGTACATTGAAATTTTTAGCCAGTGGAAAAACATTCTCGATCAACCAAACAAACGCGCAACACTGGCTATAAATTCATCAACTCTACAACCGTACGGTTCATTAGTTTGGAGTACATGGGTTCCCATCATTAAAGCGACAATAACAACGTGGAATCCTCGCGACTGCGAACCCATGATAAGACTACTGGAGCTCTGGAAAGATGTGATTCCACATTGGATTTTAAACAATCTGTTAGAACAGGTTATATTGCCACAGATAAACACGGCCGTGCTGCAATGGAATCCGTTAACCGATACAACGCCAATCCATATTTGGATACATCCGTGGATCCCATTAATGGGCGCAAGAATGCAGTCGACGGTTTATCCTATAATTGAAGACAAATTGGGAGCAGCACTGACTAGTTGGCATCCGTCTGACAGATCGGCAAAATTAATGCTGCGGCCATGGCAGGCGGCCATGTCTACCGGATCGTTTGAAGCATTTTTACATAAACATATTCTGCCGAAATTAGAAGTTTGCTTGTCGAGTTTGGTTATCAATCCACATCAACAACATTTGGATGCATGGAACTGGGTAATGGACTGGTCTGATATGTTTTCAACAGCAGCAATAACACTTTTACTGGAGAAATGTTTCTTTATTCGATGGATTCAGACATTAGTTTTGTGGCTCAATCAGTCTCCAGATTACACTCAAGTGACAGATTGGTTTACCGGATGGAAAAGTATGTTATCGGAACAGTTGCTACAGCAGCCGAATATTAAAGGATATTTCCGTAAAGCCTTAGAAATGATCAATCATTCCGTGAAGCAGCCAATGAAACAACAACCGGGAGCATTAGAAACAGTTTCATATTTAACCAACCTGGAAAGTCAACCGCCTCCACCGCCCCCTCCTCCTTGTATCTCCACCCGAGAGATGTTAGAACAAGCTTCACGTATGTCAGTGCCTCAGAGTTTCAAAGACTTGGTTGCACAGAAATGTGAAGAAAGAGGTATTATATTCGTTCCAATTCCAAACCGATATAGGGAAGCCAAACAAGTATATCGAATCGGAAACGCAGGCACTCAATGCTACATGGAtagaaatatgatatttgctactaCTAATGGTACAAGTTGGGTTCCTGTCgctttaaacaaattattagaaATGgcttaa
- Protein Sequence
- MNEDEMEKFEITDYDLDNEFNTQRPRRKLTKHQQTYGIWADDSDNEDDVRDRKKNRAPKDYSAPIGFISAGVQNQKKKDDAPKDEKNSDQSDDEGTSNSRRRFMANSSSESEDEKPSFGQSKKVRDFVLYSETTGEIAGLRKSGKAPLNPALIDRGVGNWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKKTSLADKGKKHDSGDESDTREKQNKWKKGDKKPIKSRYYYKSVDDVIERGKQPGAIRTAEVISELSKVKVIDMTGPEQRILSGYHALSGPKKPPGGGELYEDVIHKQCANFALPELQHNLDLLVDSCEQEIVWIDREKRHVSDRMVALEQERSSLYDVVTKEKKQIDILQNVLDIVSRIMDPSHALSLRQVAEAFKELQENYYEEYLMHDLAELAPGIVGPLITSVLVSWSPLVAPEQYIEIFSQWKNILDQPNKRATLAINSSTLQPYGSLVWSTWVPIIKATITTWNPRDCEPMIRLLELWKDVIPHWILNNLLEQVILPQINTAVLQWNPLTDTTPIHIWIHPWIPLMGARMQSTVYPIIEDKLGAALTSWHPSDRSAKLMLRPWQAAMSTGSFEAFLHKHILPKLEVCLSSLVINPHQQHLDAWNWVMDWSDMFSTAAITLLLEKCFFIRWIQTLVLWLNQSPDYTQVTDWFTGWKSMLSEQLLQQPNIKGYFRKALEMINHSVKQPMKQQPGALETVSYLTNLESQPPPPPPPPCISTREMLEQASRMSVPQSFKDLVAQKCEERGIIFVPIPNRYREAKQVYRIGNAGTQCYMDRNMIFATTNGTSWVPVALNKLLEMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530194;
- 90% Identity
- iTF_01530194;
- 80% Identity
- -