Vnig003148.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000005.1:13053957-13057342[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-11 9.7e-09 35.4 0.0 2 39 433 471 432 475 0.90 2 4 6.5e-12 9e-10 38.7 0.1 1 39 486 524 486 527 0.95 3 4 1.5e-17 2e-15 56.7 0.0 1 45 541 586 541 586 0.97 4 4 8.7e-19 1.2e-16 60.7 0.0 1 44 593 637 593 638 0.96
Sequence Information
- Coding Sequence
- ATGAAACTGAATTGTAAGAAAACCAAATCAGACGATAAAATTGCTTGTTTAAACTTCTTCGCCCAGGTTCAACAATTTTGGGATGCTTTGATTTCTGAAGTTAAATTACTGATAGCTTGCCCTAATTGGCAAAATATGGTAAAAAGTCAATTAACAATGTTACAGAAAGAAAGACATATTAGAGATTTCAATAATGAATGTTGCATTTGTTTGTTACAGTCATTATTAAAAACGGCCGATCAGTTAAAAATTAAAGGACTATGTGAAGTTTCCGACAACAGTACAATATGCAACAATAACACTGACAATTATCCGTTTGGTTTTCACCACGGTGCCGCTGAAATATTACCATCAGCTTCGCGTCGATTattcacaaataaatataagagATCATCTCTTCAATCAAACTTCTCTACGTCATCAAAAAAGTACAAATTAATACCAAACACGAGCAAGTatcgaatttataataacaacAGAGAACAATCGATCAACAATGACAAAGAGTTGAATAACGAAACAAGTGATAAAACAGCTAAGTCGATAAAAACAAGTGAAGAGAACGAAGACGATGATGTTGACAAGAACGCAACAATGCCGGTGGTGATTTTACAAGAAGACCAGCAGGCTGGAAGTACGGAGGACACGAAAGGTGGAATTGGTGGACGCGACGCCACGGGAACTTTTAACGGACAGAGGTGCGATAGAGACGGCGTAATATCGCCGGCACTCAGCGATAACAGCGTTCAACAGCCTTTGAATATGACTGGACACGGATTAATACCGTCTCAGCATGTAGTCGTGGGCGACGTTGGCGAAGTGGAACTTCCTCCAGAACCACCAGCGCCTGCTGCGACCCCAGTTCGACCTTCAGATATCTTACAATGCGAACCATCTCACTGTACAACTCATCATGATTTGTCAGAGACGAGTTCAAGTCACGGCGATGTGAAAGTGAAATTTGAAACATTACGTTCAGTTGACGCTAACGATATCGACAGTAGACTATCTGGTGCAGGAGATAATCGCGCCGGTAGTTCAATGGGAGGCGGTTCAATCGATGGTGACGATTTATCCCAACATTCACATCTTGGAAGTAGCACATCGCAACAAATGCATCATACTATGATGATAACGCCCGAACTTCTCGGTCTTATTCCAAGCTCATCACATACTgATTTGAATTCCGAACAAGGACTTAAAACTAATGGTCATTCGATGCATGGTCATATATCAAACGGCGGAGGTCATAGTAGTCATACGGGTACGGGAGGCGGAGGACCAAAAACTTGGAGTCAGGAAGATATGGAACTTGCACTGGATGCATTAAGAAATCATAACATGAGTCTAACAAAGGCATCTGCCACATATGGAATACCTTCAACAACACTTTGGCAGCGAGCTCATAGACTGGGAATAGACACCCCTAAAAAGGAAGGTCCAACTAAATCTTGGACAGAGGATAGTTTGAATTCAGCTTTGGAAGCTTTACGGACTGGTACAATATCGGCTAATAAAGCCAGTAAAGCGTATGgaATACCGAGCAGTACTCTATATAAAATAGCCCGCCGTGAAGGTATTAGATTAGCAGCACCATTCAATGCCGCTCCAACAACTTGGTCACCGGAAGACTTAGAAAGAGCCCTGGAATCAATCCGTTCTGGTCAAACATCGGTTCAAAGAGCTTCCACTGAATTCGGAATTCCCACGGGAACATTGTACGGACGCTGTAAACGGGAAGGCATTGAGTTATCCCGATCAAATCCAACACCTTGGTCGGAAGATGCTATGGGGGAAGCATTAGAAGCAGTCAGAGTTGGTCAGATGTCGATAAATCAGGCCGCAATCCATTACAATCTTCCGTATTCGTCACTTTACGGTCGTTTCAAGCGCGGCAAATACGAAACAGAGCCCGTTCAACAGCATCAACAGTCATCGAACGACGGAAATAGTCAACAGCAGCTTCAAATTAGCATGGGCGGTGACAGCTCCAGCCAAGATCATAACATGATGGTGGCTTACCATCATCAATCACCACCGAATAACGGTCCTCAGCAAACCGAACAGCAATATCACCAATATCATGATATTAGCTGA
- Protein Sequence
- MKLNCKKTKSDDKIACLNFFAQVQQFWDALISEVKLLIACPNWQNMVKSQLTMLQKERHIRDFNNECCICLLQSLLKTADQLKIKGLCEVSDNSTICNNNTDNYPFGFHHGAAEILPSASRRLFTNKYKRSSLQSNFSTSSKKYKLIPNTSKYRIYNNNREQSINNDKELNNETSDKTAKSIKTSEENEDDDVDKNATMPVVILQEDQQAGSTEDTKGGIGGRDATGTFNGQRCDRDGVISPALSDNSVQQPLNMTGHGLIPSQHVVVGDVGEVELPPEPPAPAATPVRPSDILQCEPSHCTTHHDLSETSSSHGDVKVKFETLRSVDANDIDSRLSGAGDNRAGSSMGGGSIDGDDLSQHSHLGSSTSQQMHHTMMITPELLGLIPSSSHTDLNSEQGLKTNGHSMHGHISNGGGHSSHTGTGGGGPKTWSQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDSLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYETEPVQQHQQSSNDGNSQQQLQISMGGDSSSQDHNMMVAYHHQSPPNNGPQQTEQQYHQYHDIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01529988;
- 90% Identity
- iTF_01529988;
- 80% Identity
- -