Vnig008862.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- retn
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000020.1:2041730-2053871[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-20 1.6e-16 61.0 0.0 17 89 4 74 1 74 0.94 2 2 0.15 3.6e+02 2.2 0.0 15 42 185 212 166 216 0.68
Sequence Information
- Coding Sequence
- ATGATTTCAGGAAGTCCAATAAATCGTCTCCCAATAATGGCGAAGTCAGTGCTGGATTTATACGAATTGTACAATCTGGTGATCGCGCGTGGTGGTCTTGTAGACGTAATCAACAAGAAACTGTGGCAAGAAATCATCAAAGGTCTCAAACTACCATCGTCGATCACTTCGGCGGCATTTACACTCCGAACTCAatACATGAAATATCTCTATCCATACGAATGcgaaaaatgcaatttaagcAATCCAAACGAGTTACAAGCGGCAATTGACGGAAACAGACGTGAAGGTCGGCGAAGTAGTTACGGAACTTACGACATGGTACAGCGTAGTCCCGTTTCATCAGCACAGATGTCACCGATGACTCTGATGTCGCAACACCAAACAATACAATCAATGGCTAACAAAATGATGCCCAACGGAGCCCATCATCCGAGTCATGCCCTTCCCTTAGGTCAGCCCCCGTCATTAGGCCCTATTCCAGGCATTGCACCGGAATTTGAAAGCCGGATGGCtgaatacataaaattatttaataattccgCTCGAAATGAAACCGGGTCTCCCACAAATCCCTTTAATCCTATTGAAATGTCACGATTGACGCTTTGGAATTTATATAATCAAACTCAACAAGAACCTCAGAGGGAAGCCCTGAACTTATCTGATCCAACTCCACCAATTCAGTCCCCACAACAAACGCAGCCAGCCGTAACTATTAAAAGAGAATTGCCCGATAGAGAAAATGTTCCACCGGCCAAGAGAGTGTCCCCAGATGAAGAAATGCTTCCTCCAGCACCAGCACCTGCCCATACCTCTAATTCCCAAAGGACCAGTATTAAAATCACGAGTAGAGAAGAATCTCCAAGCGGCGATAATTCGATGGTTGTAACGATGGACATCAATGGCACCATTTATCAAGGAGTATTATTTGCTCAAAACTCCTCACAAAATGGTGCCCGGAGTTCGCGAATCACAACGTGA
- Protein Sequence
- MISGSPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLKLPSSITSAAFTLRTQYMKYLYPYECEKCNLSNPNELQAAIDGNRREGRRSSYGTYDMVQRSPVSSAQMSPMTLMSQHQTIQSMANKMMPNGAHHPSHALPLGQPPSLGPIPGIAPEFESRMAEYIKLFNNSARNETGSPTNPFNPIEMSRLTLWNLYNQTQQEPQREALNLSDPTPPIQSPQQTQPAVTIKRELPDRENVPPAKRVSPDEEMLPPAPAPAHTSNSQRTSIKITSREESPSGDNSMVVTMDINGTIYQGVLFAQNSSQNGARSSRITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01529865;
- 90% Identity
- iTF_01529865;
- 80% Identity
- -