Vcam009109.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- PRDM7
- Assembly
- GCA_951394065.1
- Location
- OX596043.1:2658134-2665174[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.43 1.2e+04 -2.9 0.2 26 48 379 401 375 403 0.86 2 17 0.036 1e+03 0.6 0.0 21 45 431 455 423 462 0.83 3 17 0.0026 75 4.2 0.0 21 46 459 484 447 490 0.82 4 17 0.0056 1.6e+02 3.2 0.0 21 44 487 510 483 514 0.90 5 17 0.041 1.2e+03 0.4 0.0 22 46 516 540 511 548 0.82 6 17 0.037 1.1e+03 0.5 0.0 21 45 543 567 535 574 0.83 7 17 0.0094 2.7e+02 2.4 0.0 21 46 571 596 559 603 0.82 8 17 0.0024 70 4.3 0.0 21 46 599 624 591 630 0.85 9 17 0.0014 41 5.1 0.0 21 47 627 653 616 660 0.82 10 17 0.037 1.1e+03 0.5 0.0 21 46 655 680 651 688 0.84 11 17 0.021 6.1e+02 1.3 0.0 20 46 682 708 666 715 0.79 12 17 0.022 6.4e+02 1.2 0.0 21 46 711 736 696 743 0.80 13 17 0.024 7e+02 1.1 0.0 21 46 739 764 727 771 0.79 14 17 0.024 6.9e+02 1.1 0.0 21 46 767 792 750 800 0.80 15 17 0.054 1.6e+03 -0.0 0.0 21 45 795 819 778 826 0.78 16 17 0.0029 83 4.1 0.0 21 44 823 846 810 850 0.85 17 17 0.00048 14 6.6 0.2 21 49 851 879 847 882 0.90
Sequence Information
- Coding Sequence
- ATGGAcagacgacattgtggcggagTCgtaCCGAGCAAGCCAAATGTTCCATGGTTCGTCCCCCGAGCTGCCCTCACTATTCCCAACGTGTTCCTGCACATCTCTCACTCCATCATACCAGATGCGGGGCTGGGTGTGTTCTCCACGCTGACGTTGCCCAGCGGAGTGCGCTTCGGCCCATACCGTGGCGAGAAGACCTATGTCGCTGACACTACCTACTGCTGGCAGATATACGACAAGAACCGCAAGCCAGCGCACTACATCGACGCGGGCGACGCCGACAGATCCAACTGGATGCGATACGTCAACTGTGCGCGTCACTGGCGGGAACAGAACTTGGTAGCCTTCCAGTACCAGGGACAACTCTACTACAGaacTATCAAAATAATACCGCGATTCACGGAGCTCATGGTTTTCTATGGGAGCGAGTTCGCGTGCGAGCTAGATGTGGATCTTGGCAAATACAACTCTCCAACTGGATACGCTCAGAAATTCGgTGCGCCAGATGCTAAGAAACGTAAACCTAATGATGATAACGCTAACTCAAGACAAGAATCATCCAATGCAAGGTTTAACTGCGCTTTGACCAAGATTCAAGACTCTACAGTCAACAGTTCGATACTCCAAGACAAAGCAAATGAAGCTAAACATGACTATACAAAATCTGACATTAACGGAACCCTATCGCAAGTTCTACCTACTATAGCCGAAAGATCTACCGAGGCCAATGATCAAAGAAAATCTAAGCGTAAATGTAAAGTTAGATACAAAACTatgaaaaccaaaataataaccAAAAGCACTGAAATGActaagaaaaacacgaataacAATACCCCAACTAACGACAATAAAGgtactaaaaacaaaataaagctCAAGACTGGTGAAGGAGTATTAACCGCTCAATCCAAAGAGCTAACTGATGTAATCAATTCAAATATCCTGAACAATGTAGCAGGACATGAAACTGATAAGATAAAGCCACCAGGTAAGCTTGATACGAAAAATAGTGGCGGTAAAAATACATATCCTTTAGATGCATACTACTATTGTAATTATTGCAGCAAGAAATTCGTATCAGAGCAAGACATGCAAAAACACTTGAGATTTCATGATCCCCTTCGTACTTTTGTATGTGAGATTTGCGAGCTGAGATACACCCAACTACAAATTTTGAACGACCATATAAAGCTTGTTCACACGAAAGACAAACAGTTTGCATGCACCTtttgtgataaattattttgtgctgattgtaatttaaaaacacATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTCATTTAAAATCACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAGAGGATTTGCTAaaagtattaatttaaaaacacataTGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAGGATTTGCTAaaagtattaatttaaaaacacataTGAGAACACACACTGGTGAAAAGGCGTATGCTTGTGACTTGTGCGATAAAGGATTTGCTAaaagtattaatttaaaaacacataTGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTAGCTTAAAAACACATATGAGAACACACATTGGTGAAAAGCCGTATGCTTGCGACATGTGCGATAAAGGATTTGCTAtaagtattaatttaaaaacacataTGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTAGCTTAAAAAGGCATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGATAGCTTAAAAAGGCATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGAAGCTTAAAAACACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTCATTTAAAATCACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTAGCTTAAAAACACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTCATTTAAAATCACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTCGCTTAAAAACACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGTAAGTGGTCATTTAAAATCACATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGACATGTGCGATAAAAGATTTACTGAAAGTGGTAGCTTAAAAAGGCATATGAGAACACACACTGGTGAAAAGCCGTATGCTTGTGAAATATGCGATGAAAGATTTACTCAAGCTACTAGTGTTAGATAtcatctaataaaaaaacacctcgGAAGGAAGTAA
- Protein Sequence
- MDRRHCGGVVPSKPNVPWFVPRAALTIPNVFLHISHSIIPDAGLGVFSTLTLPSGVRFGPYRGEKTYVADTTYCWQIYDKNRKPAHYIDAGDADRSNWMRYVNCARHWREQNLVAFQYQGQLYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPTGYAQKFGAPDAKKRKPNDDNANSRQESSNARFNCALTKIQDSTVNSSILQDKANEAKHDYTKSDINGTLSQVLPTIAERSTEANDQRKSKRKCKVRYKTMKTKIITKSTEMTKKNTNNNTPTNDNKGTKNKIKLKTGEGVLTAQSKELTDVINSNILNNVAGHETDKIKPPGKLDTKNSGGKNTYPLDAYYYCNYCSKKFVSEQDMQKHLRFHDPLRTFVCEICELRYTQLQILNDHIKLVHTKDKQFACTFCDKLFCADCNLKTHMRTHTGEKPYACDMCDKRFTESGHLKSHMRTHTGEKPYACDMCDRGFAKSINLKTHMRTHTGEKPYACDMCDKGFAKSINLKTHMRTHTGEKAYACDLCDKGFAKSINLKTHMRTHTGEKPYACDMCDKRFTESGSLKTHMRTHIGEKPYACDMCDKGFAISINLKTHMRTHTGEKPYACDMCDKRFTESGSLKRHMRTHTGEKPYACDMCDKRFTESDSLKRHMRTHTGEKPYACDMCDKRFTESGSLKTHMRTHTGEKPYACDMCDKRFTESGHLKSHMRTHTGEKPYACDMCDKRFTESGSLKTHMRTHTGEKPYACDMCDKRFTESGHLKSHMRTHTGEKPYACDMCDKRFTESGRLKTHMRTHTGEKPYACDMCDKRFTVSGHLKSHMRTHTGEKPYACDMCDKRFTESGSLKRHMRTHTGEKPYACEICDERFTQATSVRYHLIKKHLGRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509779;
- 90% Identity
- iTF_01509779;
- 80% Identity
- iTF_01509779;