Vcam016107.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596053.1:4650642-4653317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.1 13.8 2.0 1 23 81 103 81 103 0.97 2 10 1.6e-05 0.0013 19.7 0.3 2 23 109 130 108 130 0.96 3 10 2.3e-07 1.8e-05 25.6 1.0 1 23 137 159 137 159 0.98 4 10 4.4e-05 0.0034 18.4 0.2 1 20 164 183 164 185 0.96 5 10 2.9e-05 0.0023 19.0 1.4 2 23 197 218 196 218 0.96 6 10 2.5e-05 0.0019 19.2 1.6 1 23 224 246 224 246 0.98 7 10 1.7e-05 0.0013 19.7 2.8 1 23 252 274 252 274 0.98 8 10 0.00011 0.0088 17.1 4.3 1 23 280 302 280 302 0.97 9 10 6e-06 0.00047 21.1 1.7 2 23 309 330 308 330 0.97 10 10 0.00013 0.0099 16.9 5.6 1 23 336 359 336 359 0.94
Sequence Information
- Coding Sequence
- ATGTTCTTCTATTTCAGTATAAAGCTAGAGAGATACGACGATTGGGATATATCTGCAGAAAATGACCTGCCCGTCAGTCTTGCGTCAGTCAAGTGTGAAGTGACTCACGGCGTCAAACAAGAGCCATTTGAAGAACAGccgGGCTACGAACATAATGGACACCAGTCGAATGAAAACTCGGAATACATTGATGACAGCGCCGCTTCGGAACACTTCCTGGCATTCTCGACCGATAACAAATACAACTGCAAAATTTGTTGCAAATCGTTCGCCAGCGGCACCAACTTAACCAGACATGAATTAATACACACACGCGTCAAACTAGAGTGTCAAATATGCGGGAAACGGTATGTCGGACAAGATCTATATAACAAACATATGGAAAAACACAATTTACCCGGAAAAATGTTCCCTTGCGagatatgtgaaaaaaaattcaagtcCTCCTCAAATTTACTACAGCACAAAAGAGTTCATTTGCCTAAAGGGTACCAATGCAATGTGTGCTTAAAGTCGTTCACGATAAAGGCTAATCTAGCTCGACACCAGGGGAGGTCTATTTGCAAACCCGTCGACAACAAACCGCTAATATGCGAGTTTTGCAACAAAGTGTTCGAGAAATCGTTTCTGTTAAAATCACATTTGAGAAAACACGACACCGATAGGCCTTACCAATGCGATCTGTGCGggctacattttaaatataaaagtgCTATCATTCGACATATACAGTACCATTCCGGTTTCAAACCCCACAAGTGTCCGTATTGCGATAAAACGTTTACGCACCCGGGTTTGATAAAGCCACACTTGCGAACGCACACCAAAGAGAAACCTTACCAATGCACCATTTGCTTCAAAAAATTCGCGCACAAGCAAAATATGGAGCGACATAAAATCAACCACGGGAGGATCAAGCGTCTCGTGTGCGACATATGTCACAAGAAGTTTCCGAGGGAATCTCGCTTGATATATCACATGAAGACGCACACGCGGGAGAAGTTCTTCGATTGCGAACATTGCGGGAGGCAGTTCACGCACAAGTCGAATGTGATGCGACACTTTGAGAGGAAGCACCCAGGGTTCACGTACCAGGGGACCGACACCGATGCGAAGGTGGCTCTCAGGGTCtgggataaggtcaaaggtcTGCTGCGGCCACACTACGATGTGTATCAACAGCCCGAGgagattttagggtag
- Protein Sequence
- MFFYFSIKLERYDDWDISAENDLPVSLASVKCEVTHGVKQEPFEEQPGYEHNGHQSNENSEYIDDSAASEHFLAFSTDNKYNCKICCKSFASGTNLTRHELIHTRVKLECQICGKRYVGQDLYNKHMEKHNLPGKMFPCEICEKKFKSSSNLLQHKRVHLPKGYQCNVCLKSFTIKANLARHQGRSICKPVDNKPLICEFCNKVFEKSFLLKSHLRKHDTDRPYQCDLCGLHFKYKSAIIRHIQYHSGFKPHKCPYCDKTFTHPGLIKPHLRTHTKEKPYQCTICFKKFAHKQNMERHKINHGRIKRLVCDICHKKFPRESRLIYHMKTHTREKFFDCEHCGRQFTHKSNVMRHFERKHPGFTYQGTDTDAKVALRVWDKVKGLLRPHYDVYQQPEEILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509775;
- 90% Identity
- iTF_01509775;
- 80% Identity
- iTF_01509775;