Basic Information

Insect: Venusia cambrica
Gene Symbol: -
Assembly: GCA_951394065.1
Location: OX596034.1:14812010-14831142[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.5 5.1e+02 2.1 3.2 1 21 152 172 152 173 0.93

2 13 0.02 1.5 10.0 0.2 3 20 188 205 187 209 0.95

3 13 0.0035 0.27 12.4 0.6 1 23 248 270 248 270 0.97

4 13 0.0065 0.5 11.6 0.2 2 23 312 334 311 334 0.93

5 13 0.029 2.2 9.5 0.3 2 20 340 358 339 359 0.89

6 13 0.00034 0.026 15.6 1.7 1 23 368 391 368 391 0.97

7 13 5.5e-05 0.0043 18.1 0.6 1 23 413 435 413 435 0.98

8 13 1.3e-06 0.0001 23.2 3.8 1 23 442 464 442 464 0.98

9 13 2.5e-07 2e-05 25.4 1.4 3 23 478 498 476 498 0.96

10 13 1.1e-06 8.8e-05 23.4 0.8 1 23 504 526 504 526 0.99

11 13 1.6e-06 0.00012 23.0 2.8 2 23 533 554 532 554 0.96

12 13 1.4e-07 1.1e-05 26.3 1.5 1 23 560 582 560 582 0.99

13 13 0.0035 0.27 12.4 0.1 1 23 588 610 588 610 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.5	5.1e+02	2.1	3.2	1	21	152	172	152	173	0.93
2	13	0.02	1.5	10.0	0.2	3	20	188	205	187	209	0.95
3	13	0.0035	0.27	12.4	0.6	1	23	248	270	248	270	0.97
4	13	0.0065	0.5	11.6	0.2	2	23	312	334	311	334	0.93
5	13	0.029	2.2	9.5	0.3	2	20	340	358	339	359	0.89
6	13	0.00034	0.026	15.6	1.7	1	23	368	391	368	391	0.97
7	13	5.5e-05	0.0043	18.1	0.6	1	23	413	435	413	435	0.98
8	13	1.3e-06	0.0001	23.2	3.8	1	23	442	464	442	464	0.98
9	13	2.5e-07	2e-05	25.4	1.4	3	23	478	498	476	498	0.96
10	13	1.1e-06	8.8e-05	23.4	0.8	1	23	504	526	504	526	0.99
11	13	1.6e-06	0.00012	23.0	2.8	2	23	533	554	532	554	0.96
12	13	1.4e-07	1.1e-05	26.3	1.5	1	23	560	582	560	582	0.99
13	13	0.0035	0.27	12.4	0.1	1	23	588	610	588	610	0.97

Sequence Information

Coding Sequence: ATGGGGTGGATGATCACCGCCATCATCATCGTACTAGCAGTATTTGTTATATTCTTCCTATGGAATCACTTCAAGAATAGGACCAAACTATGGTTCCTGCGACAAGTGAACGGTCGCGGACCGCAGattcgCAGAGGTGATGGATTGCCCACTACAATATGCTGTGAATGTAGAAACAAAGCTGAGAAAGCCTATGAATTTAGAAAGAAGTCTGAAGAAGCACATAAAGCTCTCAAAGGTTTCTATAGAGATGAGAAAACCTCATTGTTTGAATTTGAAGACAATAATTGTATTCAGAAATCCATTGATTTTAAGACTGAAGATTCTCAATTCAGTGATAACGAAGATATTTCCGATGCGGATTATTGTTTACCTCTTAAACATAGACCACCTGATTTGAATAATATTGAGCATAAAGTGGAAGTCAAAAATGAGAGTTCAAATCAAATGTATTTTGAATGTAAAAAATGTTGCCTAATGTTCCAAACTCGAGCAAAGTATCAAGaacacaagaaaataaaatgtgttaaagttGAATTCGAAGATCCTAATGGCGCACATTGCCCAATCTGTGGTACTAGCTACGAAGGCGCAATAAGTCTATCGAATCACATGTGGCAGTTTCATGCTGACGTGATGGGGCCGAAGAAAAGAGGACGACCTAAAAAGGCAATGACATCAacGATACTCAACAAATTGTCCGAGAATGGGTTCTTTATAAAATCAGTTCAAGGAAAGAAGTTTAAATGCGGATTTTGTAAGGAGCAGACTGAAACTAAAGAAGATCTGAACGTCCACTTACTCCAACATAGCAatgtgAAAGTTCTATGCTGTGTTCAATGCAAGAAAATGTACCTAAAGAAGAGAAACTTTGACATACACGCATGTACTAAGGAAATACCGAAAGCTGGGAGAAATGCTAATATCGTTCAAGTATGCAGCGCGTGTAGTGAAGTTTTTACGACTGAAGGAGATCTGACAAGCCATCATGACGTGGAGCATCCAGAACTATCATTACGGTGTAACCATTGTTCCAAGGTATTTGCTTCTGTTAAGACTGCAGCCCGCCACAGGGTCTTGTGCAAAGATATAGATAGGACACACAGGTGTTCAACATGTGGCCTTAAGTTCGCCTATGAAATATCActcaataaacatattttgagaTACCACCAGGGAGAAAAGGTCTCCGTTGCTCGTAAAGAAAAGCCTCCGAAACCCGCTGAAAACATGCAGTACCAATGCGATACGTGTAGTAAAATTTTTCAACGgaaGGAAGCGCTTGCCAAGCATGCCAAGTTACACATGCCGAACCAAAAGTTGTTCGAATGTGAAATTTGCCATAGAAAGTTCAATAGAAGTGATAATTTGCGCACACACAAGCGGATCCACGATGCCGACCGGCCGAAGGCACCGACAAACAACCACCTGTGCCTGTACTGCGGTCGCGGGTTTTCCAACTCCTCGAATTTGATCGTGCACATGCGCCGGCATACCGGCGAGAAACCTTACAAATGCGATTTTTGCGAAAAAGGTTTTCCGAGGTCCTCGGACCTAATGGTCCACAGGAGATCGCACACTGGCGAGAAGCCTTGCGTCTGTCGTCTTTGCGGCAAAGCGTTTTCCCGCAGCAACAAGCTGTCCCGTCATATGCGCGTGCACACCGGCCAGCGGCCGTACAAGTGTACGTACTGCGATAAGGCCTTCTCCCAAAGCAACGACCTTACGCTGCACGTGCGCCGCCACACCGGCGACCGGCCCTACATCTGCGAGGTCTGCGGCGACAGATTTATCCAGgGTACAGCATTGCAGAACCACCGCCGAGCTCATGGCCACTTTACCGTGCCACCTCCTGGCTTGGCCAACCAAGTACCAATAACATACGCGGTCGCTAATATAATCCATCACGACTCCCATATATCCAACTCGATTGCGTga
Protein Sequence: MGWMITAIIIVLAVFVIFFLWNHFKNRTKLWFLRQVNGRGPQIRRGDGLPTTICCECRNKAEKAYEFRKKSEEAHKALKGFYRDEKTSLFEFEDNNCIQKSIDFKTEDSQFSDNEDISDADYCLPLKHRPPDLNNIEHKVEVKNESSNQMYFECKKCCLMFQTRAKYQEHKKIKCVKVEFEDPNGAHCPICGTSYEGAISLSNHMWQFHADVMGPKKRGRPKKAMTSTILNKLSENGFFIKSVQGKKFKCGFCKEQTETKEDLNVHLLQHSNVKVLCCVQCKKMYLKKRNFDIHACTKEIPKAGRNANIVQVCSACSEVFTTEGDLTSHHDVEHPELSLRCNHCSKVFASVKTAARHRVLCKDIDRTHRCSTCGLKFAYEISLNKHILRYHQGEKVSVARKEKPPKPAENMQYQCDTCSKIFQRKEALAKHAKLHMPNQKLFECEICHRKFNRSDNLRTHKRIHDADRPKAPTNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFTVPPPGLANQVPITYAVANIIHHDSHISNSIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811280;
90% Identity: iTF_01509777;
80% Identity: iTF_01509777;