Vcam000900.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596034.1:14812010-14831142[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.8 6.8e+03 -2.1 0.0 3 8 20 25 20 30 0.79 2 11 0.081 1.4e+02 3.2 0.2 15 43 184 209 168 210 0.82 3 11 0.0092 17 6.2 0.1 11 30 242 263 238 272 0.75 4 11 0.0018 3.2 8.5 0.5 10 34 334 353 329 358 0.75 5 11 2.4 4.2e+03 -1.5 1.2 17 43 368 391 353 392 0.70 6 11 0.31 5.6e+02 1.3 0.3 17 30 413 427 405 440 0.77 7 11 0.0026 4.7 8.0 2.2 14 38 439 460 430 464 0.80 8 11 7.4e-05 0.13 12.9 1.0 18 41 477 497 468 499 0.86 9 11 0.16 2.8e+02 2.3 0.1 17 36 504 520 498 527 0.75 10 11 8.2e-05 0.15 12.8 3.5 15 40 530 552 522 555 0.84 11 11 0.012 21 5.9 0.2 18 39 561 579 557 583 0.74
Sequence Information
- Coding Sequence
- ATGGGGTGGATGATCACCGCCATCATCATCGTACTAGCAGTATTTGTTATATTCTTCCTATGGAATCACTTCAAGAATAGGACCAAACTATGGTTCCTGCGACAAGTGAACGGTCGCGGACCGCAGattcgCAGAGGTGATGGATTGCCCACTACAATATGCTGTGAATGTAGAAACAAAGCTGAGAAAGCCTATGAATTTAGAAAGAAGTCTGAAGAAGCACATAAAGCTCTCAAAGGTTTCTATAGAGATGAGAAAACCTCATTGTTTGAATTTGAAGACAATAATTGTATTCAGAAATCCATTGATTTTAAGACTGAAGATTCTCAATTCAGTGATAACGAAGATATTTCCGATGCGGATTATTGTTTACCTCTTAAACATAGACCACCTGATTTGAATAATATTGAGCATAAAGTGGAAGTCAAAAATGAGAGTTCAAATCAAATGTATTTTGAATGTAAAAAATGTTGCCTAATGTTCCAAACTCGAGCAAAGTATCAAGaacacaagaaaataaaatgtgttaaagttGAATTCGAAGATCCTAATGGCGCACATTGCCCAATCTGTGGTACTAGCTACGAAGGCGCAATAAGTCTATCGAATCACATGTGGCAGTTTCATGCTGACGTGATGGGGCCGAAGAAAAGAGGACGACCTAAAAAGGCAATGACATCAacGATACTCAACAAATTGTCCGAGAATGGGTTCTTTATAAAATCAGTTCAAGGAAAGAAGTTTAAATGCGGATTTTGTAAGGAGCAGACTGAAACTAAAGAAGATCTGAACGTCCACTTACTCCAACATAGCAatgtgAAAGTTCTATGCTGTGTTCAATGCAAGAAAATGTACCTAAAGAAGAGAAACTTTGACATACACGCATGTACTAAGGAAATACCGAAAGCTGGGAGAAATGCTAATATCGTTCAAGTATGCAGCGCGTGTAGTGAAGTTTTTACGACTGAAGGAGATCTGACAAGCCATCATGACGTGGAGCATCCAGAACTATCATTACGGTGTAACCATTGTTCCAAGGTATTTGCTTCTGTTAAGACTGCAGCCCGCCACAGGGTCTTGTGCAAAGATATAGATAGGACACACAGGTGTTCAACATGTGGCCTTAAGTTCGCCTATGAAATATCActcaataaacatattttgagaTACCACCAGGGAGAAAAGGTCTCCGTTGCTCGTAAAGAAAAGCCTCCGAAACCCGCTGAAAACATGCAGTACCAATGCGATACGTGTAGTAAAATTTTTCAACGgaaGGAAGCGCTTGCCAAGCATGCCAAGTTACACATGCCGAACCAAAAGTTGTTCGAATGTGAAATTTGCCATAGAAAGTTCAATAGAAGTGATAATTTGCGCACACACAAGCGGATCCACGATGCCGACCGGCCGAAGGCACCGACAAACAACCACCTGTGCCTGTACTGCGGTCGCGGGTTTTCCAACTCCTCGAATTTGATCGTGCACATGCGCCGGCATACCGGCGAGAAACCTTACAAATGCGATTTTTGCGAAAAAGGTTTTCCGAGGTCCTCGGACCTAATGGTCCACAGGAGATCGCACACTGGCGAGAAGCCTTGCGTCTGTCGTCTTTGCGGCAAAGCGTTTTCCCGCAGCAACAAGCTGTCCCGTCATATGCGCGTGCACACCGGCCAGCGGCCGTACAAGTGTACGTACTGCGATAAGGCCTTCTCCCAAAGCAACGACCTTACGCTGCACGTGCGCCGCCACACCGGCGACCGGCCCTACATCTGCGAGGTCTGCGGCGACAGATTTATCCAGgGTACAGCATTGCAGAACCACCGCCGAGCTCATGGCCACTTTACCGTGCCACCTCCTGGCTTGGCCAACCAAGTACCAATAACATACGCGGTCGCTAATATAATCCATCACGACTCCCATATATCCAACTCGATTGCGTga
- Protein Sequence
- MGWMITAIIIVLAVFVIFFLWNHFKNRTKLWFLRQVNGRGPQIRRGDGLPTTICCECRNKAEKAYEFRKKSEEAHKALKGFYRDEKTSLFEFEDNNCIQKSIDFKTEDSQFSDNEDISDADYCLPLKHRPPDLNNIEHKVEVKNESSNQMYFECKKCCLMFQTRAKYQEHKKIKCVKVEFEDPNGAHCPICGTSYEGAISLSNHMWQFHADVMGPKKRGRPKKAMTSTILNKLSENGFFIKSVQGKKFKCGFCKEQTETKEDLNVHLLQHSNVKVLCCVQCKKMYLKKRNFDIHACTKEIPKAGRNANIVQVCSACSEVFTTEGDLTSHHDVEHPELSLRCNHCSKVFASVKTAARHRVLCKDIDRTHRCSTCGLKFAYEISLNKHILRYHQGEKVSVARKEKPPKPAENMQYQCDTCSKIFQRKEALAKHAKLHMPNQKLFECEICHRKFNRSDNLRTHKRIHDADRPKAPTNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFTVPPPGLANQVPITYAVANIIHHDSHISNSIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811280;
- 90% Identity
- iTF_01509809;
- 80% Identity
- iTF_01509809;