Vcam013389.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venusia cambrica
Gene Symbol
-
Assembly
GCA_951394065.1
Location
OX596049.1:368841-387079[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.0088 17.1 0.1 3 23 148 168 147 168 0.97
2 19 1e-06 8e-05 23.5 1.2 1 23 174 196 174 196 0.99
3 19 6.4e-06 0.00049 21.0 2.7 1 23 202 224 202 224 0.99
4 19 3.6e-06 0.00027 21.8 2.2 1 23 239 261 239 261 0.98
5 19 0.00067 0.052 14.7 1.0 1 23 276 298 276 298 0.97
6 19 5.9e-05 0.0045 18.0 3.1 1 23 313 335 313 335 0.98
7 19 4.1e-07 3.1e-05 24.8 1.5 1 23 350 372 350 372 0.99
8 19 0.00018 0.014 16.5 2.8 1 23 378 400 378 400 0.98
9 19 0.00064 0.05 14.7 0.0 1 23 407 429 407 429 0.98
10 19 1.3e-05 0.00099 20.1 2.1 1 23 435 457 435 457 0.99
11 19 0.17 13 7.1 1.8 1 23 464 486 464 486 0.98
12 19 6.9e-07 5.3e-05 24.1 2.3 1 23 492 514 492 514 0.99
13 19 0.17 13 7.1 1.8 1 23 521 543 521 543 0.98
14 19 2.8e-06 0.00022 22.2 1.5 1 23 549 571 549 571 0.99
15 19 0.0043 0.33 12.1 0.8 1 23 578 600 578 600 0.99
16 19 2.2e-06 0.00017 22.5 1.8 1 23 606 628 606 628 0.98
17 19 0.0023 0.18 13.0 0.3 1 20 634 653 634 656 0.93
18 19 4.4e-05 0.0034 18.4 1.4 2 23 663 684 662 684 0.96
19 19 4e-06 0.00031 21.7 1.4 1 23 690 713 690 713 0.97

Sequence Information

Coding Sequence
ATGGCACGGGGCATGGGGGTCCCCGTGCCACCCCCCGGCGACCTACTCGCCACTATATCCATGTTCGAACAACAAATCAAAGCTGAACCCATGAGTTTCTACCATCCTCACGTCACTCATGTGCACGGCGGTCCTCCAACGATAGGGCGTTCCGAGTCAAACCATCACCTGATGAACCCTCATCACCACCAAGAGGACTCAAAAGATAGCTTAATAGTGCAACAGCAAGTACACCATCAGCATGATCTCATGGAGCAACACCAGCAGCAGGAAATGCAACAGGATGATGAGCTGAGTTTCAAGGGCATGGAAGATGAAGGTGTTGATATGGATATGGATGCAAGACAGTGTTCACAGGGCATGGGCGTGGACATGGGATCAGTTCAAACTAAAATGGAGGTAAATGGCGGTCAATCTACACCTCGATCTAAACCGCAGGCCTGTAAGGTTTGCGGCAAAGTGCTTTCGTCTGCTTCATCATATTACGTCCACATGAAGCTTCATTCAGGGAACAAGCCTTTCCAATGCACAGTTTGCGACGCGGCCTTCTGCCGCAAGCCGTACCTCGAAGTCCACATGCGAACGCACACCGGCGAGCGCCCCTTCCAGTGCGACCTGTGCTTGAAACGATTCACACAGAAGTCAAGTCTGAATACGCACAAACGCGTGCACACAGATGAGCACTTGCACGCGCTGGTGACCAAGGACCGGCCGTACCAGTGCGAGCTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGATGGTCAAGGACCGGCCCTACCAATGCGGCCTCTGCTTTGTGAGATTCACACAGAAATCGAGTTTGGGCCGGCACGGAAAGTTACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTCGGACGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCCTATCAGTGCGACATCTGTGACAAGCGGTTTACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGCCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGACCTTACGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCGAGCCTCAATATACATAAGAGGACGCATTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACAACCGCACGCACACCGGCGAGCGCCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAAGGACGGCCCTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAGTACTTAGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAATGTGATGTGTGCCTCAAGAGATTCGCGCAAAAGTCAACTCTCAACATTCATAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCGGCCGCGTTTACCTGCAAGCCGTACTTGGAGATTCACACTCGCACGCACACCGGGGAGCGCCCCTACGAGTGCGATGTCTGTTATAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGAGAATACACACTGGTGAACGTCCTTACGCTTGTGATATTTGCCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCTCATAGATGGTCCCACGTGGCCGATAAGCCCTTAAACTGCGACCGATGCTCGATGACGTTTACGTCCAAGTCTCAGTTCGCTCTACACATCCGCACCCACGCGCCCGGACCGTGCTACGAATGCAGCGTTTGTGGACGTACTTTTGTACGAGACAGCTATCTTATACGTCACCACAACCGCGTGCACCGAGACAACCACAGTAACATGTCTGCGAACAGCATCGTCCACCCTCACAGTGTGGCCACCGGCACCAACAACTCCAACAACGGCGGGTTCGACTCGCCCGCCGTCTGCGATCTGAGCTTCGTCCCGTTGGTGAACCGTTACATGACATCGCAAGGTACGCAGGTGTCGATGCAAGATGCCCAGAAAATGGCTGCGATGTCGCCCCAATCGATCGCATCTATATCGTCGCCCCCTCCCCCGCACACGCCGACGCCCCAGCCGCAGATGTCGGGCCCACTGCACATGGCAGACTGA
Protein Sequence
MARGMGVPVPPPGDLLATISMFEQQIKAEPMSFYHPHVTHVHGGPPTIGRSESNHHLMNPHHHQEDSKDSLIVQQQVHHQHDLMEQHQQQEMQQDDELSFKGMEDEGVDMDMDARQCSQGMGVDMGSVQTKMEVNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVTKDRPYQCELCQMRFTQSSSLNRHKKIHTEEHRRALMVKDRPYQCGLCFVRFTQKSSLGRHGKLHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYACGQCPAAFARRPYLDIHLRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHTRTHTGERPYECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHAPGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIVHPHSVATGTNNSNNGGFDSPAVCDLSFVPLVNRYMTSQGTQVSMQDAQKMAAMSPQSIASISSPPPPHTPTPQPQMSGPLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00737671;
80% Identity
-