Vcam012977.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- Lrrfip1
- Assembly
- GCA_951394065.1
- Location
- OX596048.1:6210735-6222639[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.2 5.7e+03 -3.0 0.0 39 73 69 103 52 109 0.61 2 2 8.5e-64 2.4e-59 201.7 9.4 1 186 121 299 121 333 0.88
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTTGGAAATGGCTACGCCTGATAACAGCGATGAAGAGAGCGGAGATGCCTTCACCGACGGTGACTTTGGAGATTCCGATGATGAATCCGTATTGGATCGCAATGATAACACAACATCGAACAGTTCTATCAACGAAACAATAAATGCAGAAGTTCAGCACAAGTTAATAAATGGAAAATCAAATGGTCATCTCGATGATCTTGCTGAAGAACCAATAGTCAACGAATGTAATCACAGTGAACATACGAGTGATGTGGGAAATTCCAGCGGCATAGCTGATGTGAGACGAGATTCGCATGGGGATCAGAACGCTTCGATTGTCGGAATACTCGGAGACCAGCACAATCAAGCAGAGCAGCGTCTGGCGGCGCGACGAGCGGCGCGCGCCGAGGCCCGAGAGATCCGCATGCGGGAGCTTGAGCGGCAGCAGCGCGAGCAGGAAGACCATGCCGACAAGGCATACGACATGTACGCAGAAACGGTCGGCAGACGAGGCCCCCGACTGGCGGCGCTCAGCCCGGCCGCCGTGCACTCGCCGCGGCGGAGCTCCGAGGACTCCACCGATACAGACTCGTTCAGCATTAAGGACTTGAGGCATGAACTAAAGGAGGTAGAGGAGAAATTCCGAAAGGCGATGATTCTAAACGCACAGCTGGACAACGACAAGGCGTCACTCGGCTACCAACTGGAGCTGCTCAAAGACAGGATCGACGAGCTGCACGAGGAATACGCACAGTTACAGCGTGAACACCGAGAAAAGTGCTCCGTCCACGAGCGGCTAAAACGTGAGCACACGTGTGTGGAGCGCGAGCTGACGGCGGCGCGGGACGCGGTGCGCGCGCGGGACGCCGCCGCCGGGGCGGCCGGGTTCCTGTtcgcggaggcggcggcgggcgcgCACGCCACGGGCTTCGGGGACGTGCCGCCGCTCGCGCTGCTCTCGCACGAGGCGGATCTCATGCTGGGCGATGGAGAAGCCACCTTGGGTAAGTTCGAGACGTATTactga
- Protein Sequence
- MGHRLEMATPDNSDEESGDAFTDGDFGDSDDESVLDRNDNTTSNSSINETINAEVQHKLINGKSNGHLDDLAEEPIVNECNHSEHTSDVGNSSGIADVRRDSHGDQNASIVGILGDQHNQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVHSPRRSSEDSTDTDSFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELHEEYAQLQREHREKCSVHERLKREHTCVERELTAARDAVRARDAAAGAAGFLFAEAAAGAHATGFGDVPPLALLSHEADLMLGDGEATLGKFETYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -