Vcam002451.1
Basic Information
- Insect
- Venusia cambrica
- Gene Symbol
- -
- Assembly
- GCA_951394065.1
- Location
- OX596035.1:16998736-17001132[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-10 2.9e-07 30.8 0.0 1 45 12 56 12 56 0.95
Sequence Information
- Coding Sequence
- ATGTCTCCTCGTAAAAAGAGAGGAGAGTCCTGGTCAGAAGATGATTTAAAAGCGGCTTTGAAAGCTGTGCGCAAAGGTAAAGAAAGTCAGCGAGCCATAGCTCTCAAATATAAAATTCCGCGAAGAACATTGAGGGATCACGTGAAGACTGGTCAAGATGTCAAACGTTTAGGACGAAAACCTGTTTTGACAAACGCCCAGGAAAATGATTTATGTTGTAGAATAAAGAGGTTTGCAAAAATTGGAGTACCCCTCACACCAAAGTTCATTAGAAAGCAAGCTTTTATGTTTTGTGAGAGATTTGACATCAAGCACAACTTCAATCCATTAAGAAAGATTGCAGGTGCTGATTGGTTAAGACAGTTTTTGAAGAGAAACCCATCGATCAGCAAACGTAAGCCGCAAATAATGAACCCAGCTCGTGCTCAAAAGTTGAATAAGGTAATTGTTCAGCAACATTTCCAGAGTGTAAGTAAGTTATACGACCAGCTGGAAATTCTTCAACATCCTGAAAGATTGTATAATATGGATGAAAAAGGTTGCCGAATTACAGTCCATAAGCAGCACACAGTACTTGCAGAGAAAGGAAGTAAGAGAGTTCACCTTGTTGCACCTGAACACGCCGAAAACGTTACGATCGCAATGTGCGTCAATGCCATAGGAACAGTGATTCCTCCTATGCTCCTCTTTAAAGGGCAAAGACAAAGACCTGATCTTTCAGAAAACTTACCTGCTGGAACATTAGTTAGAATGGCACCGAAAGGTTCTATGACTGCGGACTTGTTTGTGGAATTCATCCAGCACCTAGCTAAATACAAGGTACCAGGAAAGTGTTTACTCATTTTTGATGGTGCAAAATGTCATTTATCGATTGTAGCACTCGAAGAAGCAGATAAAAATGATATAGTGTTGTATTGCCTCCCTTCAAATACAACGCATGAGCTACAGCCCCTGGATAAGTCGGTTAACAAGTCTTACGAACATCACTGGGATGAAGAAGTTCTCCACTTTTTATACGTTAGCACCGACAGAGCACTCACAAAAGccacattcaataaaatatttactcgaGTTTGGCCCAAGTGTATGACACTCAGCAACATTGTTAATGGCTTCAAGGCTACCGGTCTCTTCCCTTTCGATCCTGAAGCGATACCAGAGGAAGCATTTGCCCCATCTGTTTTATCAGAAATTCCATGCCCCCAAACTAACTCATTAGACAATGACACTGATGACACTTCTGATACTAATGGTGATCGATTACCCAGAAATCCATTTATACTGACTCCACAGGGACAAACAGCTCTAGATAAatcatttcatgaaaatattaatccAGGCATCAAGCCCCACCTCGTGGATTATAGCTCGTCATCCGATGTTTCTGATATGGAATCAGTTTTGCAAAATCCTACATCTCAAGTTACGATAGAACAGGACTGTGCGTCGCCGTCCTTATTACCAGATAGTAACATAACTTGTTTGACCGAAACAGATCAACAACTTGATGGAGCTATACATTTAGAACAACAAGATCCAGCCGTTCCAAGTTGTTCCGGATTACAAAGACCTGTACGCGACGATACCGGTTCTGATTCAACAATTTCAGACTTGGATTCGTTCGTAACTAGGCCTGTTTTCAAACAATCCAAATATTtcgctgaaaaaatatatagttactcATCAGATGAATTGTCAAGGGATGAAAGTCAGTATCCTATCAACAAAGTAGAATCAACACCGAAGAAACAAATGGTCTGTCCTATTCAAAATGAATCTCGCTATTCAGATGATGACATTCCATTGGCCAGTCTACAACAAAGGAATAAGACACAATTTCAACAGTTCTTACCAACCCCTAACTATGCATTGACTAAATCTAAAAAGCCGCGCAAGAAAGCGATGAACTACATAGGACAAAAAATCACTAAAGACTTATTCAATGACAATACTGAAAATGAAAGCagaaggaaaagtaatgacaaaaaCATGAATACAACTGCTAAAGATCAGAAAAgtggtcataaaaataaacagaaaaatgaaaaagaaacgaaaaaatgcCAGAAGATTAAAGTGGAAGAAAAAATTAACAAGGACGAAAAAGAAAGAAGAGGAAAAAAACAtgatacgaaaataaaaacaattaaaaagcaGAAAAGTGGTCAGAGAAATAAAAACCtacagaaaaatgaaaaagaaacgaaaaaatgcCAGGAAAGGAAAGAGGAAGAAAAAATGAACACGGACGAAAAAGAAGACTGGTACTGTTATGCTTGTTACGATATAAAACAGTTGGATATGCGCCAATGCTTAATATGTAAAAGATGGTACCATGAGGAGTGTGTAGGTCTCTCTAAATGTgatatagagtttatttgccCAGATTGCGAATAA
- Protein Sequence
- MSPRKKRGESWSEDDLKAALKAVRKGKESQRAIALKYKIPRRTLRDHVKTGQDVKRLGRKPVLTNAQENDLCCRIKRFAKIGVPLTPKFIRKQAFMFCERFDIKHNFNPLRKIAGADWLRQFLKRNPSISKRKPQIMNPARAQKLNKVIVQQHFQSVSKLYDQLEILQHPERLYNMDEKGCRITVHKQHTVLAEKGSKRVHLVAPEHAENVTIAMCVNAIGTVIPPMLLFKGQRQRPDLSENLPAGTLVRMAPKGSMTADLFVEFIQHLAKYKVPGKCLLIFDGAKCHLSIVALEEADKNDIVLYCLPSNTTHELQPLDKSVNKSYEHHWDEEVLHFLYVSTDRALTKATFNKIFTRVWPKCMTLSNIVNGFKATGLFPFDPEAIPEEAFAPSVLSEIPCPQTNSLDNDTDDTSDTNGDRLPRNPFILTPQGQTALDKSFHENINPGIKPHLVDYSSSSDVSDMESVLQNPTSQVTIEQDCASPSLLPDSNITCLTETDQQLDGAIHLEQQDPAVPSCSGLQRPVRDDTGSDSTISDLDSFVTRPVFKQSKYFAEKIYSYSSDELSRDESQYPINKVESTPKKQMVCPIQNESRYSDDDIPLASLQQRNKTQFQQFLPTPNYALTKSKKPRKKAMNYIGQKITKDLFNDNTENESRRKSNDKNMNTTAKDQKSGHKNKQKNEKETKKCQKIKVEEKINKDEKERRGKKHDTKIKTIKKQKSGQRNKNLQKNEKETKKCQERKEEEKMNTDEKEDWYCYACYDIKQLDMRQCLICKRWYHEECVGLSKCDIEFICPDCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509532; iTF_00267122; iTF_01509531;
- 90% Identity
- iTF_01509532;
- 80% Identity
- -