Vcan010143.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- Prdm15
- Assembly
- None
- Location
- scaffold:340372-344125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.3 7.3e+02 1.3 0.0 2 23 254 275 253 275 0.90 2 14 0.0026 0.3 11.9 4.2 3 23 284 305 283 305 0.97 3 14 4.5e-06 0.00052 20.6 1.4 1 23 465 487 465 487 0.99 4 14 0.01 1.2 10.1 0.3 1 20 491 510 491 511 0.95 5 14 0.00044 0.05 14.3 3.3 1 23 521 543 521 543 0.98 6 14 1.9 2.2e+02 2.9 1.0 2 20 548 566 548 568 0.92 7 14 5.1e-05 0.0059 17.3 6.6 1 23 572 594 572 594 0.96 8 14 3.1e-05 0.0036 18.0 1.5 3 23 616 636 615 636 0.98 9 14 0.14 17 6.4 2.9 1 23 641 663 641 663 0.97 10 14 4.1e-06 0.00048 20.7 0.2 2 23 669 690 668 690 0.96 11 14 0.0038 0.43 11.4 8.7 1 23 695 718 695 718 0.96 12 14 3.5e-05 0.0041 17.8 3.4 1 23 724 746 724 746 0.97 13 14 0.00041 0.047 14.4 7.9 1 23 752 775 752 775 0.96 14 14 0.026 3 8.8 4.5 1 23 780 803 780 803 0.95
Sequence Information
- Coding Sequence
- ATGCCACCCCTGAAGCGCCAGCTTATATCAATTCGAAACGCAACAGTGTCAATAAATGATACGGAAAATAATGAGAAAATCACAGTCGAATCTTTTTTGACAGTTTGTAGCATTTGTGGCCAGGAGCACGCCACCACCGGCTGTCAATTTTTCCTCGCGCTAAAATATGTGAAGGATGAGCCTTTACTGTCCAGAGCCAGGCTGACATTGCCAAAGAATCTCGAAATTACAAAAATGGCTGATGGTTCTACAACAGTAATAACAAAATGTGATTTCCAACAAGGAACAACTTTTGGTCCGCTGCAGGCTCAACGAGACTGGACCATGAATCCTATGAATGAATTTCCCATTAAAGTCTTTGGGAAAGGCCCAATGGATACATTTCATTTGGATCGTTCTAATGAAAATGCATCAAATTGGATGTGCTTCGTTTCTCCTGCATCAAATTCCTTTGAACAAAATCTTGTTTGCTATCAAATGGAGAGGGACGTTTACTACACCGCCATGCGATTTATCCCTTCTGGGGAAGAGCTGAGGGTTTGGTATGCTCCTTATTACGCTTTAAAAATGAAAATGCCGCTGTACAACACAGAGTTTGCGAATGTCAGTCGACACACAACAACAGAGGAGATCGGTCATGTTGATCAGTCCCACGAAGATACTGTAGATCTTCCAGATATTTCACATAGAAATATTGAAGAAATCGTTCATAGATTGCCAGCCGAACAATTGGGGGCCTTGAGTGACAAAACCAGCTGGAATTGTACGATATGCTCGGTCGTAATGAATTCGGTAATCGAATACGCGAAACACTTGATGGAACATTACAAACCTCTTTCCGGTGTATTTTGTGACGTATGTAACAAAAAATTTCACAGACTGTCGGTATTGGAAAAACACAAACGATCGAAACATCCTAAAGGAAGAACCAACGACGACGTTGCCGGTATTTTGACCTCGGAAAATCAACAACAGCAGAACGCTCAGACCATACTCATGAACATGAACGATTCCGAGGGTCAAACTTCAGAAGCGATGAAAGACATACTGGTCAAATTGAAAACCGGTAAATCATTGACGGAATGCAGTTTATTACTGCCCATGGAGATTGAGGCGGAAAAAGAAAACCCAAACGATCTGTCTCTTCTCGACGCGCATTCAATAAACGTCAACGATCTCCTGCCTAATAACGCCGCATTGACCGAAAATTCGTCGTTAAAATCAATCCTGGAAAATCAATGTTTGAATTTGAGTTTGGAGGCGATAACGGACTCGATGCTCTCGGACAACACGAACTGCGTTGATTCTGACAAATTTAACGTCGAAGAGTTGACCTCTGAGTTTTTGGACATAACACCGGACGTTGCCACAATGAATCGTAGGATTCTTAGTTTTCAGTGTGACATATGTGAAAAAAAGTTTGGGAAGGCTGATTATCTCTATCGACACTTGAGAAAACACACCGGAGAATTTGTCTGTCCGAGTTGTTTAGGTGTATTCGCTCGAAAAGAAAATTTGATGTCGCACCTGTGTCCTTCGCAACAGTTCGACCATCGAAAATTTGAGTGTTCGTATTGTCAGAAACTCTTTTTAACAAAAAAATATCTGAAACGGCACATGGCGAAACACACGGATTGGAACGTTTGTAAATGGTGTAGGAATTTATTCACTTCGAGGCTCGAACTCGAGGCCCACAAGTGTCAAGCTCCGAAGCACGATTGCTCTCAGTGCGGCAAACGATTCGTTCATCGGGAGCATCTCAATCGACACGCCAAATCACACACGAATCCTAAGCCTGTACCAAAGAAAACGAAAAAGCGGCTTGCAGAGGAAAAACCAGCGATATGCGAGAAGTGTGGCGATGTTTTTAAGAATCCTCACAGCTTGAAGCAGCACTTGAGATCTCACGGAGAGAGGAAATTCGAGTGCGACATTTGCCACAGTAAATTTCACCGAATCGGCGTTTTGCAACAGCACAAATCAATCCATCAAAGTATTCAGATTCCCTGTCAAATTTGTGGCAAGAAATTCAAGAGCAAAAAGGCACTGAGCGTTCACATACTTTTGCATGGTAACAGAAAATTCCATTGCGAAAAGTGTGATAAAAGTTTCTTCCAAAGATGCAATTATCTAAAACATTATAGGCAAATGCATGGTGAAAAAGTGTTGCACAAATGTCCCCACTGTCCAACTGAATTTACGAGCGAGTCGAGTTTCAACAAGCACGTCGAGAGTCACGTACAGCCGAGTGAACACGCGTGCAAATCTTGCCACAAAGTTTTTCATAGGGAGTATCAGTTGAAGCGGCACGTTCGAACCAATCATAGTGGAATAGTGTACCGTTGTCCATATTGTAAAATGACAGCTCGTTACCGTCACAGTATGAGAAGGCATTTTGAGCGTCAACACGAGAGTCTTAGCGACGAATGGAACAAACCAGGTTTCGTAAATGATCTCGTTGAAAAAATGTTGCCCTCTGTGTTGACCGAGCGAGCAATCGCGCCTGATCAGAGTAGCCTAGTCGCTCAAATGTCTCATAGAAACAATGCGAAATTTGAGGCAGCCAATGATCCTCAAAACTCAAGCATCCACGAGACTCCATTTGGCGAAAAAACACAGCAGGTCAATGACGACGTCCAAAACGAACTAGAATCGAATTCGTTGAATGGCCAAGAAATCGTGCTTCCAGTCTCAGAAATGGACGGAGAAGTAACGCCGAGCGAGATACCTCAATTGAGTATCAGCGATAACGAAGCAAATTTGGCAGAATCTGTTCTGAGCAACGCGTATATCTTTGGTGAGGATGGTGGCGATATAATGTGTTATGTTTTAGACGGTACGCCCGTTATTACCGAATATTAG
- Protein Sequence
- MPPLKRQLISIRNATVSINDTENNEKITVESFLTVCSICGQEHATTGCQFFLALKYVKDEPLLSRARLTLPKNLEITKMADGSTTVITKCDFQQGTTFGPLQAQRDWTMNPMNEFPIKVFGKGPMDTFHLDRSNENASNWMCFVSPASNSFEQNLVCYQMERDVYYTAMRFIPSGEELRVWYAPYYALKMKMPLYNTEFANVSRHTTTEEIGHVDQSHEDTVDLPDISHRNIEEIVHRLPAEQLGALSDKTSWNCTICSVVMNSVIEYAKHLMEHYKPLSGVFCDVCNKKFHRLSVLEKHKRSKHPKGRTNDDVAGILTSENQQQQNAQTILMNMNDSEGQTSEAMKDILVKLKTGKSLTECSLLLPMEIEAEKENPNDLSLLDAHSINVNDLLPNNAALTENSSLKSILENQCLNLSLEAITDSMLSDNTNCVDSDKFNVEELTSEFLDITPDVATMNRRILSFQCDICEKKFGKADYLYRHLRKHTGEFVCPSCLGVFARKENLMSHLCPSQQFDHRKFECSYCQKLFLTKKYLKRHMAKHTDWNVCKWCRNLFTSRLELEAHKCQAPKHDCSQCGKRFVHREHLNRHAKSHTNPKPVPKKTKKRLAEEKPAICEKCGDVFKNPHSLKQHLRSHGERKFECDICHSKFHRIGVLQQHKSIHQSIQIPCQICGKKFKSKKALSVHILLHGNRKFHCEKCDKSFFQRCNYLKHYRQMHGEKVLHKCPHCPTEFTSESSFNKHVESHVQPSEHACKSCHKVFHREYQLKRHVRTNHSGIVYRCPYCKMTARYRHSMRRHFERQHESLSDEWNKPGFVNDLVEKMLPSVLTERAIAPDQSSLVAQMSHRNNAKFEAANDPQNSSIHETPFGEKTQQVNDDVQNELESNSLNGQEIVLPVSEMDGEVTPSEIPQLSISDNEANLAESVLSNAYIFGEDGGDIMCYVLDGTPVITEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262886;
- 90% Identity
- -
- 80% Identity
- -