Vcan005203.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- Snai1
- Assembly
- None
- Location
- scaffold:91217-94621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.9 7.9e+02 1.1 0.7 1 16 82 97 82 99 0.78 2 13 0.00012 0.014 16.1 0.2 1 23 279 301 279 301 0.96 3 13 2.2e-05 0.0026 18.4 1.2 1 23 309 331 309 331 0.98 4 13 3e-06 0.00035 21.1 0.2 2 23 339 360 338 360 0.97 5 13 2.6e-06 0.0003 21.3 0.7 1 23 366 388 366 388 0.98 6 13 4.9e-05 0.0056 17.3 2.5 1 23 395 417 395 417 0.99 7 13 3.2e-05 0.0037 17.9 2.6 1 23 423 445 423 445 0.96 8 13 1e-05 0.0012 19.5 0.2 1 23 451 473 451 473 0.98 9 13 5.2e-07 6e-05 23.5 1.2 1 23 479 502 479 502 0.96 10 13 2.7e-06 0.00032 21.3 0.5 1 23 508 531 508 531 0.96 11 13 4.2e-06 0.00048 20.7 2.8 1 23 537 559 537 559 0.99 12 13 6.8e-05 0.0078 16.9 0.4 1 23 565 587 565 587 0.94 13 13 0.00021 0.024 15.3 0.1 1 23 593 617 593 617 0.94
Sequence Information
- Coding Sequence
- ATGATTATAAAAATAAAACTAGGCTGTATCAGTTTTTTGCTACAAGGTCTTATCACCATGACGAACGATCTTGTTAAGGATTCTACTCATTGCTTCATATGCCACATCAGAGTTGGAACGTCCTCTCGAAATAGCATCCAAATTTTTGAGAACAGCACTGTTAATTCTTCAGACAAACCTCTGATTCGCATTATTTGCTCAGTTCTCCAAAAAGAAATCACTCCAGAAACTGCCCATTCCGTTTTTCTATGCAAGAAATGCTATAAATTGTTCAACGAGTTTGACGAACTTGAGAGTAGGTTGACGGAGATAAGATCAGAATTGAACGCACATTATGATCAAACCGTGAGAAAAATCATGCCCGAAGCAGTGATCCACGATGAGTACAATGATCACGATTACATAGATCAATCGGACGGTCAAATAGTAGAAACTCTGAATCTAAATTACGATGAAAAAGAGAGTGAAAGTTCGATGCAGATGAAAGATGCGGAAAGTATAGACAACTTAAGTGAGCAGTATTTGGTCCACGACATTGACAAAGTACCGATGGAAACAGTCGAATACATAGAGGAAGATGACGAAATAGTTGTGAAGATGGAGACAACGGTGACGACCGCAAACACGAACGAGTTGAAAGATGACAGCGAAAAGGATGAGGAAAATTTGAAAGAACCAGAATCGAACGTAAAAGTAGAGGAATCGGATGAACAAATAGTAATGAGAGACGGTACGGAATACACGTGTCTGTTGTGTTCGAGCGACGAGGAAAAAGTCGTTGGTGATGCAAAAGAGATAGTATTGCACGTTAAAAGCGTTCATGATTCTCGATTGTACATTTGTGACATATGCGGTATGGATTTCAAAAAGAGAAACGAATTATCGCTTCACATGGACGATCATGTGGCAAAGGAAGAAGGTGATTTTCAATGTGAAGTTTGTAACCGGATATTCAGTAATTTACGACTATTTCGTATTCACAAACGCATTCATTATCCACAAGTGAAATCTTGGCCTTGCGAAACTTGTGGTAAAAGATACAGTTCAAAAAATCTTTTGGAAGAACACATAAATACTCACACGGGTACGCGACCGTATGTTTGTGAAAATTGCGGCAAAGATTTCGCTTCAAAGTATACCTACAAAGCACACGCGAAAACTCATGAAGTGCGACCTCGACCTTTCCAGTGCAGCCAATGCAGCAAGTCTTTTCTGAGTCAACAAAATCTTAATCAGCACGAAAGGACTCACAATGGCGTTAAAGAATACGTGTGCCATCAGTGTGGAAAGGCATTCGGTTCCCACCATAATCTCGAAGTTCATAACATTGTGCACACCGGATACAAACCTTACATATGCAGAATGTGCGGCAAAGCTTTCGCTCGTAAAGCGGAAATAAGAGACCACGAACGTACGCACACTGGGGAAAAGCCTTATCAGTGTGAATTTTGCGGTGCCACATTCAGCCAAAGATCGAATCTTCAGTCTCATAAGCGAGCGACGCACTACAACGATAAGAGATACAAATGCGACGACTGTGGAAAAGGATTCAAGCGACGAAGACTCCTCGATTACCATATAAAAGCTGCGCATACCGGTGAAAGGCCTTACAAGTGTGAAACCTGCACCGCAACTTTCGTTTATCCCGAACATTTCAAGAAACACATGCGAATTCATACCGGTGAAAAACCATATCTATGTGAGGTATGCGGAAAAGCTTTCAACAGCCGGGACAATAGAAACGCTCATCGTTTCATTCACAGTGATAAAAAGCCGTACGAGTGTCTCGTCTGTGGGATGGGTTTCATGAGGAAACCGTTGCTGTACGCTCACATGCAGACGCAGGGTCATCTGAACGATACCATTGTCGTGAATCAACCGAGGTTAACAACAGACGACGAAGAAGTGATCAATATTCCTGAAGGTGACGTGGAGTTGCTGATGGAGGGAGCAGAAAACGAACAACTTGAAGAAACTGAATTGTACGTTGCTGATCTCAAAGATCACGTTATTATCGAGCGAAACGCCGATAGCATTTATCAGGAGGAAAATGTATTGAATATTTCAACTGAAGATAATGTGGGACAGGAGGAAACTGATCACGAACGCGTTGAGGACAATGCGATAACATTCGTCGATACTGGAGCACTAGATTGCAAGTCAGACGAAACCGATCAACAAGTAGAACAAGTGTACGGTTATAACACGAATGAAGACGGTGAGACAATCGTTGTCCCCAGCACCTCCAATTACAAAGAGATCGTTACCGATAAAAATTCCGTCCGTGTTGTACAAATAAGAATACCTCCTGCTGTTAATGGAGAGCCAAGTCGTTGGCTCAGTATCGTTCAAAATACATAA
- Protein Sequence
- MIIKIKLGCISFLLQGLITMTNDLVKDSTHCFICHIRVGTSSRNSIQIFENSTVNSSDKPLIRIICSVLQKEITPETAHSVFLCKKCYKLFNEFDELESRLTEIRSELNAHYDQTVRKIMPEAVIHDEYNDHDYIDQSDGQIVETLNLNYDEKESESSMQMKDAESIDNLSEQYLVHDIDKVPMETVEYIEEDDEIVVKMETTVTTANTNELKDDSEKDEENLKEPESNVKVEESDEQIVMRDGTEYTCLLCSSDEEKVVGDAKEIVLHVKSVHDSRLYICDICGMDFKKRNELSLHMDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGTRPYVCENCGKDFASKYTYKAHAKTHEVRPRPFQCSQCSKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSHHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTDDEEVINIPEGDVELLMEGAENEQLEETELYVADLKDHVIIERNADSIYQEENVLNISTEDNVGQEETDHERVEDNAITFVDTGALDCKSDETDQQVEQVYGYNTNEDGETIVVPSTSNYKEIVTDKNSVRVVQIRIPPAVNGEPSRWLSIVQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00828960;
- 90% Identity
- iTF_01299468;
- 80% Identity
- -