Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: Snai1
Assembly: GCA_963989365.1
Location: OZ022419.1:15523874-15527625[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4 5.7e+02 2.1 0.8 1 17 63 79 63 80 0.81

2 13 0.00016 0.023 15.9 0.1 1 23 260 282 260 282 0.96

3 13 2.5e-05 0.0036 18.4 1.2 1 23 290 312 290 312 0.98

4 13 3.4e-06 0.00049 21.2 0.2 2 23 320 341 319 341 0.97

5 13 3e-06 0.00043 21.4 0.7 1 23 347 369 347 369 0.98

6 13 5.5e-05 0.0079 17.4 2.5 1 23 376 398 376 398 0.99

7 13 3.7e-05 0.0052 17.9 2.6 1 23 404 426 404 426 0.96

8 13 1.1e-05 0.0016 19.5 0.2 1 23 432 454 432 454 0.98

9 13 5.9e-07 8.4e-05 23.6 1.2 1 23 460 483 460 483 0.96

10 13 3.1e-06 0.00044 21.3 0.5 1 23 489 512 489 512 0.96

11 13 4.7e-06 0.00068 20.7 2.8 1 23 518 540 518 540 0.99

12 13 7.6e-05 0.011 16.9 0.4 1 23 546 568 546 568 0.94

13 13 0.00024 0.034 15.4 0.1 1 23 574 598 574 598 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4	5.7e+02	2.1	0.8	1	17	63	79	63	80	0.81
2	13	0.00016	0.023	15.9	0.1	1	23	260	282	260	282	0.96
3	13	2.5e-05	0.0036	18.4	1.2	1	23	290	312	290	312	0.98
4	13	3.4e-06	0.00049	21.2	0.2	2	23	320	341	319	341	0.97
5	13	3e-06	0.00043	21.4	0.7	1	23	347	369	347	369	0.98
6	13	5.5e-05	0.0079	17.4	2.5	1	23	376	398	376	398	0.99
7	13	3.7e-05	0.0052	17.9	2.6	1	23	404	426	404	426	0.96
8	13	1.1e-05	0.0016	19.5	0.2	1	23	432	454	432	454	0.98
9	13	5.9e-07	8.4e-05	23.6	1.2	1	23	460	483	460	483	0.96
10	13	3.1e-06	0.00044	21.3	0.5	1	23	489	512	489	512	0.96
11	13	4.7e-06	0.00068	20.7	2.8	1	23	518	540	518	540	0.99
12	13	7.6e-05	0.011	16.9	0.4	1	23	546	568	546	568	0.94
13	13	0.00024	0.034	15.4	0.1	1	23	574	598	574	598	0.94

Sequence Information

Coding Sequence: ATGACGAACGAACTCGTTAAGGATTCTACACATTGTCTCATATGCAACATCAAAGTCGGAGCATCTTCTCGGAATAGCATCCACATTTTTGAGAACAGCACTCCCAACTCCTTGGACAAACCTTTAGTTCGCACCATTTGCTCCGTACTCCAAAAAGAAATCACTCAAGAAACCGCCCATTCTGtttttttgtgcaaaaaatGCTACAAATTGTTTAGCGAGTTCGACGAGCTCGAGACCCGGTTAACAGAGATAAGATTGGAAGTGAATGCAAATTATGAAAAAACCATGAAGAAAATAATGCCTGAAATAGTGATTCATGATGAGTATAACGATCACGACTATATAGATCAATCGGACAGTCAAATAGTAGAAACTTTGGATCTGAATAACGATGAGAAAGAGAGTGAAAGTTCGATGCAGATAAAAGATACGGAGAGCATGGAAAACTTGAGCGAGCAGTATTTGGTTCACGACATTGAGAAAGTACCGATGGAAACGGTCGAGTACATAGAGGAAGAGGACGAGATAGTAGTGAAGATGGAGACAACGATAAGAACGGAGAATACGAGCGAGTCAAAAGAGGACAGCGAAAAAGATGAGGAAAATTCGAAAGAGCCAAAATCGAATATAAAATTGGAAGAATCGAATGAACAAATAGTAATGAGAGACGGAACGGAATATACATGTCTTTTGTGTTCGAGCGACGACGAAAGAGTCGTCGGTGATGCGAAAGTAATTGTATCGCACGTTAAAGGCGTTCACGATTCTCGATTGTACATTTGCGATATTTGCGGTATAGATTTCAAAAAGAGAAACGAATTGTCGCTTCACATGGACGATCATGTGGCAAAGGAAGAAGGCGATTTTCAATGCGAAGTTTGCAACCGAATATTCAGTAATTTGCGACTGTTTCGGATTCACAAACGCATCCATTATCCACAAGTCAAATCGTGGCCTTGTGAAACTTGTGGCAAAAGATACAGCTCGAAGAATCTCTTGGAAGAACATATAAATACTCACACGGGTATGAGACCATACGTTTGTGAAAATTGCGGCAAAGATTTCGCTTCGAAGTACACGTACAAAGCACACGCAAAAACTCACGAGGTGCGACCCCGCCCTTTCCAGTGCAGTCAATGCAGCAAGTCTTTTCTGAGCCAACAAAATCTTAATCAGCACGAGAGGACTCACAACGGTGTTAAGGAATACGTGTGTCATCAGTGCGGAAAAGCATTCGGTTCTCATCATAATCTCGAAGTTCATAACATCGTGCATACCGGATACAAACCTTATATATGCAGAATGTGCGGTAAAGCTTTCGCTCGTAAAGCGGAAATAAGAGATCACGAACGTACGCACACTGGAGAAAAGCCTTATCAGTGTGAATTTTGCGGCGCAACGTTCAGCCAAAGATCGAATCTCCAATCTCACAAACGAGCGACGCACTACAACGACAAAAGGTACAAATGCGACGATTGTGGAAAAGGATTCAAGCGACGAAGACTCCTCGATTATCATATAAAAGCTGCGCATACGGGCGAAAGGCCTTACAAGTGTGAAACTTGCACAGCAACTTTCGTTTATCCCGAACATTTTAAGAAACACATGCGGATTCATACTGGCGAAAAACCATATTTGTGTGAGGTTTGCGGAAAAGCTTTCAACAGCCGAGACAATAGAAACGCTCATCGTTTCATTCACAGCGATAAAAAACCGTATGAGTGTCTCGTCTGTGGAATGGGTTTCATGAGGAAACCATTGCTGTACGCTCACATGCAAACGCAGGGCCATCTGAATGACACGATAGTTGTGAATCAGCCGAGATTAACAACGGACGATGATCAAGTTATCAATATGCCTGATGGTGATGTGGAACTGTTGATGGAGGGAGCAGAGAACGAGCAACTCGAAGAAACTGAACTGTACGTCGCTGATCTCAAAGATCACGTTATTATCGAGCGAAATGACGACAGCATTTATCAGGAGGAAAATGTATTGAATATTCCGACGGAAGAAGGTGTGGAACAGGAAGACATTGATCATCAGCGGGCTGAGGATAGAGAGataacGTTCGTGGATACCGGAGCACTAGATTGCAAGCCCGACGAAACCGATCAACAAGTAGAACAAGTATATAGTTATAACACGAACGAAGACGGTGAAACAATCGTTGTACCTGGGACCTCCGATTACAAAGAGATCGTTACCGATAAAAATTCCGTCCGTGTTGTACAAATAAGAATACCTCCTGCTGCAACTGGAGAGCCAAGTCGTTGGCTCAGTATCGTACAAAATACATAA
Protein Sequence: MTNELVKDSTHCLICNIKVGASSRNSIHIFENSTPNSLDKPLVRTICSVLQKEITQETAHSVFLCKKCYKLFSEFDELETRLTEIRLEVNANYEKTMKKIMPEIVIHDEYNDHDYIDQSDSQIVETLDLNNDEKESESSMQIKDTESMENLSEQYLVHDIEKVPMETVEYIEEEDEIVVKMETTIRTENTSESKEDSEKDEENSKEPKSNIKLEESNEQIVMRDGTEYTCLLCSSDDERVVGDAKVIVSHVKGVHDSRLYICDICGIDFKKRNELSLHMDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGMRPYVCENCGKDFASKYTYKAHAKTHEVRPRPFQCSQCSKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSHHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTDDDQVINMPDGDVELLMEGAENEQLEETELYVADLKDHVIIERNDDSIYQEENVLNIPTEEGVEQEDIDHQRAEDREITFVDTGALDCKPDETDQQVEQVYSYNTNEDGETIVVPGTSDYKEIVTDKNSVRVVQIRIPPAATGEPSRWLSIVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00828960;
90% Identity: iTF_01509049; iTF_00265915; iTF_00266642;
80% Identity: -