Vcan021774.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- scaffold:405867-409496[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.9e-118 1.3e-113 379.6 31.9 1 300 29 326 29 326 0.98 2 3 0.0034 74 2.8 2.4 122 171 326 375 324 379 0.91 3 3 0.028 6.1e+02 -0.2 4.9 194 237 357 399 338 403 0.57
Sequence Information
- Coding Sequence
- ATGGAGTCAACTATAGCAGGACGAAGACGTAACGCTACGAGGCACTCTGCCGAGGATCAAGCGCTCGACCAGATAGCCAAAGAGGCAGAAGCGAGACTGGCTGCTCGGAGACAAGCCCGTGCTGAAGCTCGGGAAATTCGGATGCGAGAGTTGGAAAGACAACAGAAAGAGGTGGAGGAGAATGCTGATAGAGTTTACGATATGTGCTCGGAAGGTAACAGAACAATGCGAGTAACGCCTGATCCAGTGAGAACGTCACGCATACTCGCGAACTCGAACAACTTCCAATCAAGTAGAAGATCATCGGAAGATTCGTTGGAAGATGCAGGTTTAAGCAGGGATCTAAGATTAGAGCTCAAAGAATTCGAGGAAAAGTTTAGAAAAGCAATGATAGCGAATGCACAGTTGGACAACGAAAAATCATCGTACGCGTATCAAGTTGATTTATTAAAAGACAAACTTGAAGAGCTGGACGAAACAACCGCACAACTGAGACGCGAGCTTAGGGAAAAAAATAGAGAAGCCGAACAGCTGAAACGTGTCAGTCAACGATTAAAGGAAGATTTCGATGTATGCAGAGCTCAATTGCTGGAGAGGGACACTCTCATTCAGGAAAATGGGCTGGTCATAGTGGACGATGAGGGTAGTGAAGACGATGAGCATGGAACGGTGAATGGATCTTGTTACAGGAAAAGAGTACTAGTCAGCACAGAGGCTGCCGAGTTGTTAGAAAATGCTGGTGAAGGCTCGCTAGACGTTCGATTGAGAAAGTTTGCTTCCGAAAAGAAGGAACTGCAAGATGAAATTGGCCACTTGAGGTTGGAATTGGAAGAAGCAAAAAGTCGTCTTAGATCCGAGAAATCCTCAGGTTCAGTATTAGGTGGGTTCTCTGATTCCGAGGATGTTCAGAGAGAAGCGAACAAATTATTGGCTGATTATAAATTTAAATTGCAAAAGGCCGAACAAGATATGTCAACGTTGCAGGCAACTGTCGCGAGGCTAGAAAGCCAAGTTATACGTTATAAATCCGCTGCTGAAGCATCGGAAAAAGCGGAAGATGAATTGAAAGTCGAAAAAAGAAAATTGCAACGAGAGGTTCGTGAGTCGCAAGGTCGTGTTGAGGAGCTTGAAACAGCAAATTCCCACTTACAGAGACGTCTGGATAAACTAAAGAATGCTAAATCGGCGCTTCTTAAAGATGCGTCTCAACGATAA
- Protein Sequence
- MESTIAGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEVEENADRVYDMCSEGNRTMRVTPDPVRTSRILANSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELDETTAQLRRELREKNREAEQLKRVSQRLKEDFDVCRAQLLERDTLIQENGLVIVDDEGSEDDEHGTVNGSCYRKRVLVSTEAAELLENAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEAKSRLRSEKSSGSVLGGFSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKDASQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01102050;
- 80% Identity
- -