Vcan020236.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- klhl36
- Assembly
- None
- Location
- scaffold:73672-77122[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00034 0.53 10.3 0.0 18 38 220 241 204 247 0.71 2 4 1e-10 1.6e-07 31.2 0.0 5 39 258 291 255 298 0.85 3 4 0.0021 3.3 7.8 0.0 6 34 311 338 307 344 0.85 4 4 1.6e-11 2.5e-08 33.8 0.1 5 39 370 404 368 409 0.93
Sequence Information
- Coding Sequence
- ATGTCAACAACAATAACAGAGAACCAGGAGCAACCTCAAAATGAAGAGAGCTGCTATTATAAATGGACCGATCATCAGACTCATTTGTCAGACGTTGTTCGACAACTTTTAGAAGAAGAATGTATGGTCGACGTAACTCTCGTTGCCGATGGCGAACGCATACAAGCTCATCGTATCGTACTGTGCTCTTGCAGTACTTTATTTCAAGAAATATTTAGTCAAACAAATGAGGAACACGCCACAATAATATTAAGCGACATATCGGCGCAAGATGTGAGATCGATTGTAGAATTTAGTTATCATGGGGAAGTGAGAACCCCTGTTGAAAACATCAGCAATCTGTTGGAGGCTGCTCATTCTTTAAGAATTTGTGGTCTTATGGAGATTGATGGATTGGATGAAAATGATGCAATAATAAGTGTGAAAGATTCGAAGGATGAAAGCGGAGAGTGCTTTGAGGATTTTGAGGAGTGCGTCGATAATGACACAGAAATGTTGGATGATGATCCACATTTGTACAAAGAAGTTAAACAGAGTTGCGAGGGTATTGAAAAAGTGATGTCAAATAAAGGAAAGAAGCGTCAAAAAAGTAATTTGAAACGTGACTACAACGATGAGATGCTTGCGTCAGCAATAAACGATCTCAAATTAGGCCAAACCCTTGTTGAAGCTTCCATCAAAAATAACATCCCACGTTCGACTCTTTACATGAGAGCAAAAGCCCTCGGGATACAACTAAACGCTTCGCGAAACGAATATCCAGCAGAATGCATGAAAGCTGCCATTGACGCAGTCATTGAAGGCTCCAGTTTGCAACATGCTTCTGATAAATTTTTCATACCGAAAACTGTTCTCTGGCGACGCATACAAAAAGAAGGGTACCAAATCCTCCGAACTGGGGTCAAACGCGCTTATGGTCAGGAGAAAAGGGATGCTGCTGTCAAAGCCCTACAGCGGGGAGAAAATCTAACAAAAGTTGCTCAACAATTTCAGATACCAAAAACAACATTGTTTCGTGAAAAGGTGAAGTTGGTCGACGAGGGTAAACTACCAGAATCATTTTGGAAGAAGCGGAAGACTGGAAACGAGGAATGGAAAAAAATGCGTTTGGAAGAAGCGGTGGCACTTTGCAAAGAGGGCAAAATGTCGCAGGCTGCAGCAGCGATGAAATACAGAATTCCAAAAACAACAATTTGGCGCAGATTGCAGCAGGAGGGAAAAAGTACTGCACGAGAGAATGTGAAAACTGCTGAACATTCGTTAAACGAGTACGAATTATCGGGAAAAACTATACAGGATAACTCCGAATTTGCTCTTTGCGAGGTATCCTCGGAAATTCCAATGACTTATATAGACTCGAATTTGCCGGCTGATTCCGTAATAATATTGACGACGGAAGACGTTGATGGTTTAAATTTGGACGAAAATAGGCAATTGATGGTTAATCAGGATTCTGAATACGTTCAATGTGCTTTGGCCATAACCGATGACGCAGAAGCCTCCGGTTATCCGCAAGCAGAGAGCTAA
- Protein Sequence
- MSTTITENQEQPQNEESCYYKWTDHQTHLSDVVRQLLEEECMVDVTLVADGERIQAHRIVLCSCSTLFQEIFSQTNEEHATIILSDISAQDVRSIVEFSYHGEVRTPVENISNLLEAAHSLRICGLMEIDGLDENDAIISVKDSKDESGECFEDFEECVDNDTEMLDDDPHLYKEVKQSCEGIEKVMSNKGKKRQKSNLKRDYNDEMLASAINDLKLGQTLVEASIKNNIPRSTLYMRAKALGIQLNASRNEYPAECMKAAIDAVIEGSSLQHASDKFFIPKTVLWRRIQKEGYQILRTGVKRAYGQEKRDAAVKALQRGENLTKVAQQFQIPKTTLFREKVKLVDEGKLPESFWKKRKTGNEEWKKMRLEEAVALCKEGKMSQAAAAMKYRIPKTTIWRRLQQEGKSTARENVKTAEHSLNEYELSGKTIQDNSEFALCEVSSEIPMTYIDSNLPADSVIILTTEDVDGLNLDENRQLMVNQDSEYVQCALAITDDAEASGYPQAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262572;
- 90% Identity
- iTF_01299406;
- 80% Identity
- iTF_01508996;