Vtam019350.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073306.1:2848518-2853879[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.64 47 5.2 0.5 1 23 235 258 235 258 0.89 2 11 0.012 0.88 10.6 0.3 1 23 265 287 265 287 0.97 3 11 0.16 11 7.1 2.9 1 23 291 314 291 314 0.95 4 11 1.1 84 4.4 0.6 2 23 320 342 319 342 0.93 5 11 6.6e-05 0.0049 17.7 1.9 1 23 345 368 345 368 0.96 6 11 0.00013 0.0097 16.8 2.9 2 23 372 393 372 394 0.94 7 11 0.66 48 5.1 0.0 3 20 403 420 402 422 0.93 8 11 0.00025 0.018 15.9 0.3 2 23 435 457 434 457 0.92 9 11 7.3e-05 0.0054 17.6 0.8 1 23 463 486 463 486 0.98 10 11 0.00012 0.0088 16.9 1.5 3 23 497 517 496 517 0.98 11 11 0.00034 0.025 15.4 0.6 3 23 524 545 522 545 0.95
Sequence Information
- Coding Sequence
- ATGGGCGGGAAAAATTCTAGCTGGTCCTCGTTTCAGGAACGCGAAAACGAACCGCTCATCAAAGATGAAATCAAAATGGAGGAGGATCACCCGCAATGCCACATTTGTCTCAGCGTCGGTCGGAAGATGTTTCCGATACGCAAATACGAAGAGATCTATAAGAGGTTACTGTACGACGAATATCAGGACCACGGTGATGTTACATTCGACGCGACGCTCGTCTGTTGGGAGTGTAACGCGTTGCTGCGGAACGTCGAACAGTTTCAGAATAGAATCAGACAGGCTAACGAGATGCTGCAGATGCAACAAaATATAGTCTCGCTATCCAGTTTGACGACAGTTGTGTTCAGTGACTCGAGTCCAAACAGTATATACTTGGAGGAGTCAGAGGAAAATACACGATACCAGATGAACAGCGAGAACGATGACCAAATCAAAGATCACGGAGGCACGTCTGACAAAGATTCTGTAGGTGAAGACGAACCTCTGGAAGAACTAACAAAGGAGGAAGAAGAAACACCTAAAGAGAAAACGGTTGATAGGAACAAATGGGCGAAGAGACGCGTGCTTGTAAACAGAGAACCTAAGTTCAGAATGATTGAAGATTTTAGTGAAATGTTCAAGAAGGTTTCGTTCAGTATTAAGATATTGCAAGAGGTTTTAGAAGAACGCAGGAAGCAGGAATGTTATACGAATAGCGAGTTCAGATGTTCGTCGTGTATACAAAGATTTGATAATAGAGAAGCTTTGATGGAACACAACATTCAGTATCACGATAAGAGCGTCGGCATGTACGTTTGCGACATTTGCCGATCGAGGTTCGCCGACGTACAGAGTCTGTCGTCGCATCTGTTCAGCCATTACTACATGTTCTACTGCAAGCTGTGTGACTACAAGTGCTACAGCGAGGACGACACGAGAAGCCATGCGCGTGCGCAGCACGGGAGTAAGGCGATGGAGTGTCTCAAGTGTAACGGACTGTTCAGCGCTCGTCGTGAGTTCTACAAACATTACAGAGACGTCCACGAGACGCACATCTGTGACTATTGTGGGCTAAGATACAAGTTGAAGGACAGTCTCATCACCCATATAAgGAAAAAACACTCAACACGAGAGTGCAATATCTGTAAGAAGACATTCACCCGTTACAACAGCCTGTGGCTGCACAACAAAGTGCACCACGGACCGCCAACGGCGACGGCTTACTGCGTCGAGTGCGATGTCGAATACGCCGATCCGTATCGCTACAAGTGGCACTTGGCGAACAGTGTTAGACACAGGCCGAGGGAGGCTGTGAGGGTTCGTTGTCCCGGCTGTGATAAAGAATTTTCAAAGAAAATCTACATGAAGAACCATTACGATCTCGTCCACCTGAAGCTTACCAAGTTCAAATGTGACGCGTGTCAAAAGTATTTTGGAAGAAACGCCGATCTTGCAAAACATCGTCGACGAGTCCACGAAGGTGTCCAACCGCCCAAAAACAAGATCTGTCATATTTGTGGACGGGGATTTACCACCAACAAGATCCTCGCCAACCACACGCGCACGCACACGCAGCGTCAGCTCGCCTGCCCACATTGTCCCGCACGCTTCGCGCACAAACGCGTGCTGGCGTCGCACATGAGGGCGATGCATCCCAGCTGA
- Protein Sequence
- MGGKNSSWSSFQERENEPLIKDEIKMEEDHPQCHICLSVGRKMFPIRKYEEIYKRLLYDEYQDHGDVTFDATLVCWECNALLRNVEQFQNRIRQANEMLQMQQNIVSLSSLTTVVFSDSSPNSIYLEESEENTRYQMNSENDDQIKDHGGTSDKDSVGEDEPLEELTKEEEETPKEKTVDRNKWAKRRVLVNREPKFRMIEDFSEMFKKVSFSIKILQEVLEERRKQECYTNSEFRCSSCIQRFDNREALMEHNIQYHDKSVGMYVCDICRSRFADVQSLSSHLFSHYYMFYCKLCDYKCYSEDDTRSHARAQHGSKAMECLKCNGLFSARREFYKHYRDVHETHICDYCGLRYKLKDSLITHIRKKHSTRECNICKKTFTRYNSLWLHNKVHHGPPTATAYCVECDVEYADPYRYKWHLANSVRHRPREAVRVRCPGCDKEFSKKIYMKNHYDLVHLKLTKFKCDACQKYFGRNADLAKHRRRVHEGVQPPKNKICHICGRGFTTNKILANHTRTHTQRQLACPHCPARFAHKRVLASHMRAMHPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01506694; iTF_01506643;
- 90% Identity
- iTF_01506694;
- 80% Identity
- -