Vata007261.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990580.1:3100764-3107197[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.64 49 5.0 0.5 1 23 306 329 306 329 0.89 2 11 0.0077 0.6 11.0 0.7 1 23 336 358 336 358 0.97 3 11 0.17 13 6.8 2.8 1 23 362 385 362 385 0.95 4 11 1.1 89 4.2 0.6 2 23 391 413 390 413 0.93 5 11 6.6e-05 0.0051 17.5 1.9 1 23 416 439 416 439 0.96 6 11 0.00012 0.0092 16.7 2.7 2 23 443 464 443 465 0.94 7 11 2.9 2.2e+02 2.9 0.0 3 20 474 491 473 493 0.92 8 11 0.00036 0.028 15.2 0.1 2 23 506 528 505 528 0.91 9 11 7.3e-05 0.0057 17.4 0.8 1 23 534 557 534 557 0.98 10 11 0.00012 0.0092 16.7 1.5 3 23 568 588 567 588 0.98 11 11 0.0016 0.12 13.2 0.7 2 23 594 616 593 616 0.95
Sequence Information
- Coding Sequence
- ATGCCTGTTAAATATTTAGTGGTTCGTACACCTGATGGACTGACTAGTTTTGTGTGTACTGATTTTCACAATAGTCAAGTTTTAGAATACAGGATAAAATTGGAAGAGGAAATTTGTGGTGATGCCCCGGAGAAAAATGAACCGTTATTTCAAGTGGACGTAGACATGGAACGCGAAAGCGAGCCGTTCATCAAAGATGAAATCAAAATGGAGGAGGATCACCCGCAATGCCACATTTGTCTCAGCGTCGGTCGGAAGATGTTTCCGATACGCAAATACGAAGAAATCTATAAGAGGTTACTGTACGACGAATATCAGGACCACGTGAGTGGACTTACTTTTTCTGTAATTGTATCTCAACAGTCTTGTCATCCGCGCCCTTGGTTCATCTATGATTTGGATTATTTTAAGGGTGATGTTACATTCGACACGACGCTCGTCTGTTGGGAGTGTAACGCGTTGCTGCGGAACGTCGAACAGTTTCAGAATAGAATCAGACAGGCTAACGAGATGCTGCAGATGCAACAAAATATAGTCTCGCTATCCAGTTTGACGACAGTTGTGTTCAGTGACTCGCATCCAAACGGTATATACTTGTCAGAGGAAAATACACGACACCAGATGAACAGCGAGAACGATGACCAAATCAAAGATCACGGCGGCACGTCTGACAAAGAGTCTAAAGGTGAAGACGAACCACTAGAAGAACTAACAAACGAAGAAGAAGAAATACCTAAAGAGAAAACGGTCGATAGGAACAAATGGGCAAAGAGACGTGTGCTTGTAAACAGAGAACCTAAGTTCAGAATGATTGAAGATTTTAATGAAATGTTCAAGAAGGTTTCGTTCAGTATTAAGATATTGCAAGAGGTTTTAGAAGAACGCAGGAAACAGGAGTGTTATACGAATAGCGAGTTCAGATGTTCGTCGTGTATACAAAGATTTGATAATAGAGAAGCTTTGATGGAACACAACATTCAGTATCACGATAAGAGCGTCGGCATGTACGTTTGCGACATTTGCCGATCGAGGTTCACCGACGTACAGACTCTGTCGTCACATCTGTTCAGCCATTACTACATGTTTTACTGCAAGCTGTGTGACTACAAGTGCTACAGCGAGGACGAAACGAGAAGCCATGCGCGTGCGCAGCACGGGAGTAAGGCGATGGAGTGTCTCAAGTGTAACGGACTGTTCAGCGCTCGTCGTGAGTTCTACAAACATTACAGAGACGTCCACGAGACGCACATCTGTGACTATTGTGGGCTAAGATACAAGTTGAAGGACAGTCTCATTACCCATATAAGGAAAAAACACTCAACACGAGAGTGCAATATCTGTAAGAAGACATTCTCCCGTTACAACAGCCTGTGGCTACACAACAAAGTGCACCACGGACCGCCATCGGCGACGGCTTACTGCGTCGAGTGCGATGCCGAATACGCCGACACGTATCGCTACAAGTGGCACTTGGCGAACAGTGTTAGACACAGGCCGAGGGAGGCTGTGAGAGTTCCTTGTCCCGGCTGCGATAAAGAATTTTCAAAGAAAATCTACATGAAGAACCACTACGATCTCGTCCACCTGAAGCTTACCAAGTTCAAATGTGACGCGTGTCAAAAGTATTTTGGAAGAAACGCCGATCTTGCAAAACATCGTCGACGAGTCCACGAAGGTGTCCAACCGCCCAAAAACAAGATCTGTCATATTTGTGGACGGGGATTTACCACCAACAAGATCCTCGCCAACCACACGCGCACGCACACGCAGCGTCAGCTCGTGTGCGCACATTGTCCCGCACGCTTCGCGCACAAACGCGTGCTGGCGTCGCACATGAGGGCGATGCATCCCAGCTGA
- Protein Sequence
- MPVKYLVVRTPDGLTSFVCTDFHNSQVLEYRIKLEEEICGDAPEKNEPLFQVDVDMERESEPFIKDEIKMEEDHPQCHICLSVGRKMFPIRKYEEIYKRLLYDEYQDHVSGLTFSVIVSQQSCHPRPWFIYDLDYFKGDVTFDTTLVCWECNALLRNVEQFQNRIRQANEMLQMQQNIVSLSSLTTVVFSDSHPNGIYLSEENTRHQMNSENDDQIKDHGGTSDKESKGEDEPLEELTNEEEEIPKEKTVDRNKWAKRRVLVNREPKFRMIEDFNEMFKKVSFSIKILQEVLEERRKQECYTNSEFRCSSCIQRFDNREALMEHNIQYHDKSVGMYVCDICRSRFTDVQTLSSHLFSHYYMFYCKLCDYKCYSEDETRSHARAQHGSKAMECLKCNGLFSARREFYKHYRDVHETHICDYCGLRYKLKDSLITHIRKKHSTRECNICKKTFSRYNSLWLHNKVHHGPPSATAYCVECDAEYADTYRYKWHLANSVRHRPREAVRVPCPGCDKEFSKKIYMKNHYDLVHLKLTKFKCDACQKYFGRNADLAKHRRRVHEGVQPPKNKICHICGRGFTTNKILANHTRTHTQRQLVCAHCPARFAHKRVLASHMRAMHPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01508372;
- 90% Identity
- iTF_01508372;
- 80% Identity
- -