Vtam004440.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vanessa tameamea
Gene Symbol
Rfx2
Assembly
GCA_037043105.1
Location
CM073281.1:12340807-12351037[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.5e-37 1.2e-33 115.9 0.0 3 78 311 386 309 387 0.97
2 2 2.4 1.9e+04 -3.2 0.0 24 32 710 718 697 724 0.69

Sequence Information

Coding Sequence
atGTCCGAGATGGGATTTGAGAACGTGTTTTACCTGGAGAGTGAGTATAGACTAGTGGGACGAGTGAAGGTGCGGAGGGATGaCTTTGAGTGCGCGGGCGACGAGGTGCTGGTGGAGTCGTCTCCGCCCGCCTCGCCCGACATGGCGGCGAGACTAGCGGCACCCTCACAGGGTGCCGGTGCGGGCGGTACTTCTCCCAGCGACGTGCGTGAGCTAATCGTCATACCGGAACTGCCCAACGCCATACACTTACAGCATGCTATTCAACAAGTATCGAGCACTGTGGTGGATGTGAACGGCGACAGTTCCGGCCACTCTAGTCCCACCACAGAGGCTCAGCACACCTACATCGTCACTATCGAGAACGCATGGGACCAAGACTCGCTGCACATCAAGTCTGAGACGCAGAGTGATGAGGAAGTGATGAGcaaCCAATCATCCGTCGTGTGCCGCGTACTTTATCCGTCTACGAACACGTCCCTCTCGCTCGGTCGGGACGCGGCGCTCCGCGGAGTTGCCCGGGAGACGTCCAGCGGCATGGAGGTGCCTCGTTACCGCGCGTACTACCCGTGTGAGTTCCAAGCTATGCTGCAGCCGCTTCAGTTCAGCATCGAACGTGAGGGCAGTAACGGAGTCAACTATCATGTGCAATATGTGGAGCCGCAAGAAATATACACCCAGACGGGCCATCAGACACATATGGAAACCCTCCGCACGTACCCGGTGTACAACGTGACCAGCGTGGGAGGCGTGGGCGGCGTGGGCGGCGTGGGCGGCGTGGGCGGCGTGGGCGGCGTGGGCGGCGTGGGCGAGGCGGGCGCCGTGACCGCCGTGACGGCCGTGACGGCGCCGCCCGACGACTGGAGCGCGGAGTTCACGTTCGCGGCCGAGCAGCCCGCgtcccccgcgccgcccgcgcgcaTGCCGCCCGCCACGGTGCAGTGGCTGCTGGAGCACTACGAGACGGCCGAGGGCGTGTCGCTGCCGCGCTCCACGCTGTACGCGCACTACCTGCGCCACTGCTCCGCGCACCGCCTGGAGCCCGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTGTTCGTGGGCCTGCGCACGCGCCGCCTGGGCACGCGCGGGAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCGTCCGCGCAGCGGGACCTGCCCGCCGCGCTGCCCAAGCCCGACCTGGAGGAGGACCAGCCCGAGCCGAGGGAACGCGATATCGATCAAAACCCAGTAGGCCTGGGTGGGATAGCTCATCGTCAGTACCTGGGATCTGTCAGCGCTCCCGAGCCTCCGGAGCTCACTATTGAGGATTTGCCGGAAGATATAACACAGGAGGCGTTGCAGCAGCTGAGGGAACAACATAGACAGCACGGCGTCGAGTTCCTGGAGGCGGTGGCGGCGCTGGACACGGGCGCCGTGGAGCGCTGCCGGCGCGCCTTCTGGCGGCGGGCCGGGCGCGCGGGGCTGCGGCTCACGGCGCGCCGCGACGTGTGCGGCTGGCTGCGGCGGGCCGAGCTGCGCCTGCACCAGCGCGCCGTCGATCTGCTGCTGCCCGACGTGCTACGGCCCATCCCCTCGCAGCTCACGCAGGCTATCCGCAACTTCGCCAAGAGCCTGGAGAGCGCGCTGGCGGCGGGCTCGAGCGGCGCCCCCGCGCTGGCCGCGCGCGCACAGAGCTCGGCCGCGGCGGCGCTGGCGGCCGCCCTGCGTCGGTACACGTCGCTCAACCATTTGGCGCAGGCCGCACGCGCCGTGCTCAACAACCAGCATCAGATACAGCAGATGCTGTCGGATTTGAACCGTGTAGACTTCCGTGTGGTCCGCGAGCAAGCCGCCTGGGCCTGCGCCTGCGGCAGCGCGTCCACCGCGCACCGCCTCGAGGCCGACTTCAAGGCGCGGCTGGGCCGGGGCGCGCCGCTGGAGGCGTGGGCGTCGTGGCTGGACGGCTGCGTGCGCGCCGCGCTGGCGCCGCACGAGCGCCGCGCCGACTAcacgccgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCCTCGCTCGTGATACGCGAGCTCACGCTCCGGTCGGCTGCGTCGTTCGGCTCGTTCCACCTGATCCGACTGCTGTACGACGAGTATGTGAGCTTCCTCATCGAGCGGCGCGTGGCCGAGCACCGCCGCGAGCCGCCCATCGCCGTCATGCAGCGCGCCATGGATGATGACGAGGAACTTCCCGAGGAACCGGAGCGCCCTGCGGAGGAGGAGGACGGAGAGCCAGAGTGGGAGTGGGAGGACGAGGATGATGAGCCGCCTGACGCCAAACGACCGAAGATTGACGAGTAG
Protein Sequence
MSEMGFENVFYLESEYRLVGRVKVRRDDFECAGDEVLVESSPPASPDMAARLAAPSQGAGAGGTSPSDVRELIVIPELPNAIHLQHAIQQVSSTVVDVNGDSSGHSSPTTEAQHTYIVTIENAWDQDSLHIKSETQSDEEVMSNQSSVVCRVLYPSTNTSLSLGRDAALRGVARETSSGMEVPRYRAYYPCEFQAMLQPLQFSIEREGSNGVNYHVQYVEPQEIYTQTGHQTHMETLRTYPVYNVTSVGGVGGVGGVGGVGGVGGVGGVGEAGAVTAVTAVTAPPDDWSAEFTFAAEQPASPAPPARMPPATVQWLLEHYETAEGVSLPRSTLYAHYLRHCSAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSAQRDLPAALPKPDLEEDQPEPRERDIDQNPVGLGGIAHRQYLGSVSAPEPPELTIEDLPEDITQEALQQLREQHRQHGVEFLEAVAALDTGAVERCRRAFWRRAGRAGLRLTARRDVCGWLRRAELRLHQRAVDLLLPDVLRPIPSQLTQAIRNFAKSLESALAAGSSGAPALAARAQSSAAAALAAALRRYTSLNHLAQAARAVLNNQHQIQQMLSDLNRVDFRVVREQAAWACACGSASTAHRLEADFKARLGRGAPLEAWASWLDGCVRAALAPHERRADYTPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSFLIERRVAEHRREPPIAVMQRAMDDDEELPEEPERPAEEEDGEPEWEWEDEDDEPPDAKRPKIDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01506081; iTF_01078799; iTF_01080470; iTF_00984760; iTF_01079614;
90% Identity
-
80% Identity
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