Vcar021956.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999953.1:5640773-5643187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.4 6.3e+02 1.7 0.4 1 23 28 50 28 50 0.95 2 20 0.048 4 8.6 0.1 2 23 78 100 77 100 0.96 3 20 0.0011 0.094 13.7 4.6 1 21 123 143 123 145 0.95 4 20 0.0054 0.46 11.6 0.4 2 23 150 171 149 171 0.97 5 20 0.029 2.4 9.3 1.1 1 23 176 199 176 199 0.91 6 20 0.35 30 5.9 3.5 2 23 209 231 208 231 0.95 7 20 0.0049 0.42 11.7 2.8 1 23 237 260 237 260 0.93 8 20 3.5e-05 0.0029 18.5 2.3 1 23 264 286 264 286 0.98 9 20 0.00023 0.019 15.9 2.7 1 23 292 314 292 314 0.98 10 20 7.4 6.3e+02 1.7 0.2 1 10 320 329 320 333 0.85 11 20 2.5 2.1e+02 3.2 2.2 1 23 375 397 375 397 0.91 12 20 0.0024 0.2 12.7 0.2 2 23 425 447 424 447 0.93 13 20 0.018 1.6 9.9 5.6 1 23 470 492 470 492 0.98 14 20 0.081 6.9 7.9 0.5 3 23 498 518 497 518 0.96 15 20 0.0011 0.089 13.8 2.1 1 23 523 546 523 546 0.92 16 20 9.6 8.1e+02 1.4 7.1 2 23 556 578 556 578 0.95 17 20 0.0022 0.19 12.8 5.2 1 23 584 607 584 607 0.94 18 20 7.7e-07 6.5e-05 23.7 2.0 3 23 613 633 611 633 0.97 19 20 6.3e-05 0.0053 17.7 4.0 1 23 639 661 639 661 0.98 20 20 0.00042 0.036 15.1 1.8 1 23 667 690 667 690 0.96
Sequence Information
- Coding Sequence
- ATGACAGTACCGGAGAGAAATAATGCTGCTGTGCTATTAATATGTACAACCGTAAGACCGTTTATATACATGGGCTCTTGTTTCAAATGTTTATTTTGTATGCAGTACTATTCGGAAGTCGCTGCTTTATTGGAGCATACATCAACACATGAAATTAACGATAAAAGTATTGTTTTAGAAAAGTATATCTCTAAAGGCAAGAGGACTTTACAAGTGGATATATCTCAACTAAAATGCCGCCTCTGCGATCAAGCGTATCCGAATTTAAACGCGATTCGCGATCATTTGAAAATCGATCATAAAAAACATTTCTTGCCAGCCAGTAATGGGATGACAGAATACAACATGGAGGTCAAGAATGGTTGCTTTATATGTCATGTCTGCGATAAGGACTTTTATTCGTTTTCGCTGTTAAATTCTCACATGAATTGTCACGTAGGTAAGGTTGTGTGTGAAAATTGTGGAGCTGGATTCCTTAATCAACATCTTCTGATGAAACATCGAGAAACGCACTTGGCTAAGAAATTTAATTGCCAGCAATGCGAGCGCGTTTTTCTTAAAAAAAGTCAGTTGAAATACCACAACGAAATCGTTCATAAGGGAAAAGAAAGGGTTAAGTTAAAGAAATGTCAACTCTGTTCCCAAACGTTTAAGGAGCATTATAGCAAAATGGTTCATCTAAAACAGGCTCACGGAATAATGAGGAGTTTCCTGTGTCACGTGTGTAAAGCAAATTTTAGCACACGACGAGCTTTGACGGAACACACAACGAGGTATCATACCGAGAAGTATAAATGTGAAGTGTGCTCTAAATGTTTCGGAATAGAGTCCAAATTGAAGCAGCACATGCGTGGACATACCGGAGAAAGAAATTTTGTATGTCCGTTGTGTAAAAATGCGTACATGCACAAAATGACTCTACGAAAACATATGAGGAGTCATGATACGGTTTTTAAATTTGTATGCCCAGAGTGTTCTGCTGGATTTCACGAGAAAATGACGCCTAGAGATCTACCGAGAAGTAGTAAATGGTCGATGACGCTAGCCGAGAGAATAAACGCAGCGCATATATTAAAAAACACAACCGTCACACCGTTCACGTACTTACTCTTCCCGAGCTCTTATAAATGTTTATTTTGTGATGTAAAGACATTTGAAATCCATTCATTGCTAGAACATTCTAGAAGCCACGTTGTTCCAAATCACGACGAAATCCTAAAGGATATTCTAAAGAAAGGCAAGAAGAAAATCAAGGTGGATATATCGAATTTAAAATGTAGGATATGCGATCAGTCGTTTGTAAGCTTGGATGATATTCAGGAACATTTGACGAACATGCATAATGTTATGTTCACGGACGCCGGAGTTGGAATGATCTCGTTTAATCTACAGACGACTGATGATCTTTTCACGTGTCATGTATGCTCGAACACATTTCACAGTTTCTTCCTCTTAAACAAACATATAAGCGTGCATTACAGTAACGCGATGTGCGATTCCTGTGGCAAAGGTTTCTTGTCATACCAACGTTTGATGACGCACATGGAAAGCCATCGCAACGGCACTTACCCCTGTGAGAAGTGCAAAAAGACCTTCCCAAGTATATCAAAACTTAAGTACCATAATGATAAATTTCACGGGACGTTGGGCAAAGTTAAGTTGGCCAAATGCCACAAATGTTTGGCGAGATTCGAACATCATTACGAGAAAATTAAGCATTTGAAGGACACTCATGGCATTTCTTTCAGTTTCACGTGCGATACATGCAACTGCGTCTTCAAAACTCGGCACTCGTTAAATATGCACGTTGTCAAGAATCATACACAGAATATCGCGTGTGAAATATGCAAGAAGACATTTTCAGAACGGTACCATTTGAAAAAGCATATGGCTACGCATAGTCAGGAGAGGAATTTTGTATGTCCATTGTGTAAGAAGTGTTACAGATACGAGAAAACGTTGAAACAACATTTGAAAATACATAATCCGGAATGGAAATTTTCTTGTTCGGTCTGTTGGACGAGTTTTTCCAATAAAATCGATTATAAGACCCATAAAACTACAATGCATTTATAG
- Protein Sequence
- MTVPERNNAAVLLICTTVRPFIYMGSCFKCLFCMQYYSEVAALLEHTSTHEINDKSIVLEKYISKGKRTLQVDISQLKCRLCDQAYPNLNAIRDHLKIDHKKHFLPASNGMTEYNMEVKNGCFICHVCDKDFYSFSLLNSHMNCHVGKVVCENCGAGFLNQHLLMKHRETHLAKKFNCQQCERVFLKKSQLKYHNEIVHKGKERVKLKKCQLCSQTFKEHYSKMVHLKQAHGIMRSFLCHVCKANFSTRRALTEHTTRYHTEKYKCEVCSKCFGIESKLKQHMRGHTGERNFVCPLCKNAYMHKMTLRKHMRSHDTVFKFVCPECSAGFHEKMTPRDLPRSSKWSMTLAERINAAHILKNTTVTPFTYLLFPSSYKCLFCDVKTFEIHSLLEHSRSHVVPNHDEILKDILKKGKKKIKVDISNLKCRICDQSFVSLDDIQEHLTNMHNVMFTDAGVGMISFNLQTTDDLFTCHVCSNTFHSFFLLNKHISVHYSNAMCDSCGKGFLSYQRLMTHMESHRNGTYPCEKCKKTFPSISKLKYHNDKFHGTLGKVKLAKCHKCLARFEHHYEKIKHLKDTHGISFSFTCDTCNCVFKTRHSLNMHVVKNHTQNIACEICKKTFSERYHLKKHMATHSQERNFVCPLCKKCYRYEKTLKQHLKIHNPEWKFSCSVCWTSFSNKIDYKTHKTTMHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01079272;
- 90% Identity
- -
- 80% Identity
- -