Basic Information

Insect: Nymphalis io
Gene Symbol: -
Assembly: GCA_905147045.1
Location: LR989924.1:1029610-1031901[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.019 1.7 9.7 0.2 2 23 45 67 44 67 0.96

2 17 0.0031 0.28 12.2 4.5 1 21 90 110 90 112 0.95

3 17 0.0043 0.39 11.8 0.4 2 23 117 138 116 138 0.97

4 17 0.061 5.5 8.1 0.9 1 23 143 166 143 166 0.91

5 17 0.37 33 5.7 3.6 2 23 176 198 175 198 0.95

6 17 0.00047 0.043 14.8 0.9 1 23 204 227 204 227 0.95

7 17 4.1e-05 0.0037 18.1 2.5 1 23 231 253 231 253 0.98

8 17 3.8 3.5e+02 2.5 2.2 1 23 297 319 297 319 0.88

9 17 0.0091 0.83 10.7 0.1 2 23 347 369 346 369 0.93

10 17 0.00032 0.029 15.3 6.5 1 23 392 414 392 414 0.98

11 17 0.041 3.7 8.7 0.5 3 23 420 440 419 440 0.96

12 17 0.00051 0.046 14.7 1.5 1 23 445 468 445 468 0.92

13 17 6 5.4e+02 1.9 7.2 2 23 478 500 478 500 0.95

14 17 0.0011 0.1 13.6 3.8 1 23 506 529 506 529 0.94

15 17 6.4e-07 5.8e-05 23.8 2.0 3 23 535 555 533 555 0.97

16 17 0.00012 0.011 16.6 4.3 1 23 561 583 561 583 0.98

17 17 0.00013 0.012 16.6 2.3 1 23 589 612 589 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.019	1.7	9.7	0.2	2	23	45	67	44	67	0.96
2	17	0.0031	0.28	12.2	4.5	1	21	90	110	90	112	0.95
3	17	0.0043	0.39	11.8	0.4	2	23	117	138	116	138	0.97
4	17	0.061	5.5	8.1	0.9	1	23	143	166	143	166	0.91
5	17	0.37	33	5.7	3.6	2	23	176	198	175	198	0.95
6	17	0.00047	0.043	14.8	0.9	1	23	204	227	204	227	0.95
7	17	4.1e-05	0.0037	18.1	2.5	1	23	231	253	231	253	0.98
8	17	3.8	3.5e+02	2.5	2.2	1	23	297	319	297	319	0.88
9	17	0.0091	0.83	10.7	0.1	2	23	347	369	346	369	0.93
10	17	0.00032	0.029	15.3	6.5	1	23	392	414	392	414	0.98
11	17	0.041	3.7	8.7	0.5	3	23	420	440	419	440	0.96
12	17	0.00051	0.046	14.7	1.5	1	23	445	468	445	468	0.92
13	17	6	5.4e+02	1.9	7.2	2	23	478	500	478	500	0.95
14	17	0.0011	0.1	13.6	3.8	1	23	506	529	506	529	0.94
15	17	6.4e-07	5.8e-05	23.8	2.0	3	23	535	555	533	555	0.97
16	17	0.00012	0.011	16.6	4.3	1	23	561	583	561	583	0.98
17	17	0.00013	0.012	16.6	2.3	1	23	589	612	589	612	0.96

Sequence Information

Coding Sequence: ATGCAGTACTATTCAGAAATTTCTGCTTTATTAGAACACACGTCAACTCACGAAATAAGTGATAAAAGTATTGTTCTAGAAAAGTATATATCCAAAGGGAAGAGAACATTACAAGTGGATATATCACAATTAAAGTGTCGGTTATGCAACCGCGCGTATCCGAATTTAAACGCAATTCGCGATCATTTAAAAATGGAACATAAAAAACAATTCTTGCCAGCCGGTAATGGGATGACGGAATACAACATGGAGGTCAAGGATGGTTCTTTTAATTGTCATGTTTGCGATAAGGATTTTTATTCGTTTGCGTTATTAAATTCTCATATGAATTGTCATGTAGGTAAGGTTGTATGTGAAAATTGTGGCGCCGGATTTCTTAATCAACATTTATTGATGAAACATCGAGAAACGCATTTGACTAAGAAATTTAATTGTCTGCAATGCGAACGCGTGTTTTTAAAAAAGAGTCAATTGAAATATCATAACGAAATCGTTCATAAGGGCAAAGAAAGAGTCAAGCCAAAGAAATGTCAACTTTGTTCCCAAACGTTTAAGGAGCATTATAGTAAAATGATACACCTAAAACAGGTTCATGGTATAACAAGGAGTTTTCCATGTCAAATTTGTAAAGCAAATTTTAGTACACGACGTGCTTTGACAGAACACACGACGAGGTATCACACCGAGAAGTTTAAATGTGAAGTGTGCTCAAAATGCTTTGGAATAGAGTCGAAATTGAAACAGCACATGCGTGGACATACCGTGACGCGTAAAGATCTTCCGAGAAGTAGTAAATGGTCGATGACGCTGGCTGAGAGAATAAATGCAGCACATATTTTAGTAAACACAACGGTCACGCCGTTCACGTATTTACTATTTCCAAGCTCCTACAAATGTTTATTTTGTGACGTAAAGTCATTTGAAATTCACACGTTGCTGGAACATTCTAGAAGCCACGTTGTTCCCAATCACAACGAAATTCTAAAGGATATCTTAAAGAAAGGCAAGAAAAAAATCAAAGTGGACATATCGAATTTGAAATGTAGGATATGTGCCCAATCGTTTGTAAGCTTGGAAAATATTCAAAATCATTTGGCAAATGTACACGAGATCGTATTCACAGACGCTGGCGTCGGAATGATTTCGTTTAACTTAGAAACGACTAACGAAATATTCAAATGTCACATTTGTTCGAAAACATTTCACAGTTTCTTCCTTTTAAACAAACACATAAGCGTACATTACAGTAACGCGATGTGCGACTTATGCGGGAAGGGATTTTTGTCTTATCAGAGATTGATGACGCACCTCCAAAGCCATCGCAACGGCACATACCCGTGTGACAAATGTAAAAAAACCTTTCCGAGTGTATCAAAACTCAAGTACCATAATGACAAACTGCACGGAAATTTAGGTAAAAATAAATTGGCCAAATGTCACAAATGTTTGGCGAGATTCGAACATCATTACGAGAAGATAAAGCATTTGAAGGAAACACATGGCATCTCTTTTACATTCACTTGCGATACTTGCAATTGCGTGTTTAAAACTCGACACGCTCTTAATATGCACGTGGTTAAGGATCACACACAGAATATTGCGTGCGATATATGCAAGAAGACATTCTCGGAGCGATATCATTTAAAAAAGCACATGGCAACACACACTCAAGAGAGAAATTTTGTATGTCCGTTGTGTAAAAAGTGTTATCGATACGAGAAAACGTTGAAACAACATTTAAAACTACATAATCCTGATTGGAAATTTTCTTGTTCTATCTGTTGGACAAGTTTTTCCAATAAAAACGATTATAAGAGTCATAAAACTACAATGCATTAA
Protein Sequence: MQYYSEISALLEHTSTHEISDKSIVLEKYISKGKRTLQVDISQLKCRLCNRAYPNLNAIRDHLKMEHKKQFLPAGNGMTEYNMEVKDGSFNCHVCDKDFYSFALLNSHMNCHVGKVVCENCGAGFLNQHLLMKHRETHLTKKFNCLQCERVFLKKSQLKYHNEIVHKGKERVKPKKCQLCSQTFKEHYSKMIHLKQVHGITRSFPCQICKANFSTRRALTEHTTRYHTEKFKCEVCSKCFGIESKLKQHMRGHTVTRKDLPRSSKWSMTLAERINAAHILVNTTVTPFTYLLFPSSYKCLFCDVKSFEIHTLLEHSRSHVVPNHNEILKDILKKGKKKIKVDISNLKCRICAQSFVSLENIQNHLANVHEIVFTDAGVGMISFNLETTNEIFKCHICSKTFHSFFLLNKHISVHYSNAMCDLCGKGFLSYQRLMTHLQSHRNGTYPCDKCKKTFPSVSKLKYHNDKLHGNLGKNKLAKCHKCLARFEHHYEKIKHLKETHGISFTFTCDTCNCVFKTRHALNMHVVKDHTQNIACDICKKTFSERYHLKKHMATHTQERNFVCPLCKKCYRYEKTLKQHLKLHNPDWKFSCSICWTSFSNKNDYKSHKTTMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01506597; iTF_01080115; iTF_01507457;
90% Identity: iTF_01506597;
80% Identity: -