Vcar022230.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999953.1:5803892-5808933[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.04 3.4 8.9 0.8 1 23 74 97 74 97 0.93 2 18 0.092 7.8 7.7 4.1 2 23 169 190 168 190 0.95 3 18 0.24 21 6.4 1.0 1 17 194 210 194 216 0.86 4 18 0.16 14 6.9 0.8 1 23 221 244 221 244 0.95 5 18 0.35 30 5.9 6.7 1 23 251 274 251 274 0.95 6 18 0.0012 0.098 13.7 0.6 2 23 282 304 281 304 0.96 7 18 0.00073 0.062 14.3 4.0 1 23 310 332 310 332 0.97 8 18 9.1e-05 0.0077 17.2 1.7 1 23 338 361 338 361 0.98 9 18 0.048 4 8.6 4.6 1 23 367 390 367 390 0.91 10 18 0.032 2.7 9.1 0.7 3 23 451 472 449 472 0.89 11 18 0.019 1.6 9.8 0.2 2 23 498 520 497 520 0.95 12 18 0.74 63 4.8 0.2 2 23 543 564 542 564 0.93 13 18 0.0091 0.77 10.9 0.1 1 23 568 590 568 590 0.97 14 18 4.8e-06 0.0004 21.2 1.5 1 23 595 618 595 618 0.98 15 18 0.00018 0.015 16.2 2.8 2 23 656 678 655 678 0.96 16 18 1.2e-05 0.001 19.9 3.4 1 23 684 706 684 706 0.98 17 18 7.9e-06 0.00067 20.5 1.0 1 23 712 734 712 734 0.99 18 18 8.6e-05 0.0073 17.2 4.2 1 23 740 763 740 763 0.97
Sequence Information
- Coding Sequence
- ATGATCCTAAAAAAAGACTTAAACGGTGAACTTCGTAAAACGAACAAAAAAGGGAAAACCTTGTCGAAAGACATAGAAGAATCCGTAGAGCGAATAAATGCGCGAAATACTCTACCGAAAGTAAGGCAAGGGGAACAATTGGAAAAACATCGTACGAACGTCAGGGAGATTATACTTTGGACGAATGCGACGCCGATACGATGCAGAGGCGGTATCGGATACGCGTGCTGTTTCTGCACGAACCAGTTCCCAGATCCTGCCGATCTGAAAACACATACAATACAGGACCACAACGATGAGACCAAATCCATATTCATGAAAGGGAGGGACATGTACGGCTATCTCGTGAAGCTGGACATCACAGCGCTGCAGTGCAAACTGTGCGGAACGAAAATGGATACGCTGGAACGGACAATGGATCATTTAAAGGATACGCACGATAAAAATATAAGCACGGATATACCGAATCACATATTACCTTTTAAATTCGACAGCGAAAACCTCCGATGCTTCATGTGTCATAACGTTTTCAACAAATTCAAGGCGTTACAGGAACACATGCACGCGCACTACAGGAACTATATTTGCAAAGTTTGTGACGCTGGTTTCGTGAATCGTCACCTTCTGCTGTGTCACAACGAGGGCCACAAAACTGGCACGTTCGCTTGCGATCAATGCAGCCAAGTCTTCGATACGATACGCAAGAGAAAACTCCACGAAAGGAAAGTTCATAACGGCTTAAATATGCCCCATAAGTGTGGATACTGTAATGAGAGATTCAAGGAGAACTGTCATAAGAATGAGCATTTGGCGAAGGTTCACGGTGTGGTGGGACCATTAATTAAATGCCAAGCCTGTGACAGAAGCTTCGCGAGTCAGCAGACTTGGTTGCTGCATATGAAGAAGTATCATTTGATGGAGAGGCAGCACAAGTGTACGAGATGTGAAAAGGAGTTTTTCTCGAAGAGGGAGCTCACCGATCATATGGTTAAGCATACTGGGACGAGGGAGTATAGGTGTGACTTGTGTTTTAAATCCTACGGGAGACTGAAGACGCTCAAGGAACACATACGGCGACTGCACCCAGAAGACCGGGACTTCAAGTGTCTCCATTGTGGACAATCGTTTGATAAGAGTTTCGCTTTGAAATGTCATATCAGCGCAAAGCACGGTATACGAACGATAAAAATCGAAAGGCGAATAGCGACACCTCGCGTGGAGTTGAAGATAGTCCGCAGTCATAAAGAGCCCCACCTGTCTGAATCAAAGAAAAATCAGCAGAATCTTAAACTGATCTTGTTGAATTCAAACGCTAATCCCATTAGGAACAAGGACAGTCTCGGCTACGGCTGTGCCTTCTGCCACGAGCAGTTCCCCGAGCCGACTAACCTTAAGAAACATTTCCTAGACGAACACAACAGTGATAGATTAATTAAATTCATGTCCAGTAAGTTATTCGACCACGTCGTCAAATTAGATATTACGTATTTAAATTGCGCTCTCTGCAACAAAGACATATCGAAACTAGAAGACCTGATGACTCATTTGAAAACGGAACATGGGAAAGAAATCCACACGGATATAAAGAGTTCCATAGTTCCGTTCAGGTTCGACACGCCGGAGTTAAGGTGTGCCGTATGCTCAGCGGAATATTTGAACTTCAAACTCCTACAAGAGCATATGAACTCGCATTTCGGTAATCATATATGCCCAGTTTGCGGTGGAGGTTTCATGACAGAACGACTGCTTGGGACGCACGTTAGGCGGCATAAAACTGGCGAATTCAAATGCGACGAATGCGAGAAAGTCTTCGGTAATAAGGAGAAATTGAAGGAACACCAAAAGAGGACCCACCTTGGTTTAGGTAAACGCAACAAGTGCTTAGTCTGTAATGAAAGGTTCCTGGATTATTGGAAGAAAATCGATCATATGGTCAAAGTTCACGGGGCTCCACCAGTTGTACTGAAGTGCCACGCTTGCGAACGAACGTTCCGTAACCAGAGAGCGCTGGCGAGGCACACGAAAAAGGACCATTTACTGGAAAGGAAGCACAAATGTGAGGAGTGCGAAATGCGGTTCTTCAGCAAGAGCAGCTTGCAACGGCACATGGCGAAACACACGGGCATACGGGAGTTCAGATGCGACATTTGTTTCAAGGCGTACGGTCGCAAGAATACGCTCAGAGAACACATGCGGATACATGCGGATGACAGGAGGTTCGCGTGCTCGCACTGCGGACAAGCGTTCGTCCAGAAATGCAGCTGGAGAAGTCACATGCGATCGAAGCACGGCGAGGAGGTTTAA
- Protein Sequence
- MILKKDLNGELRKTNKKGKTLSKDIEESVERINARNTLPKVRQGEQLEKHRTNVREIILWTNATPIRCRGGIGYACCFCTNQFPDPADLKTHTIQDHNDETKSIFMKGRDMYGYLVKLDITALQCKLCGTKMDTLERTMDHLKDTHDKNISTDIPNHILPFKFDSENLRCFMCHNVFNKFKALQEHMHAHYRNYICKVCDAGFVNRHLLLCHNEGHKTGTFACDQCSQVFDTIRKRKLHERKVHNGLNMPHKCGYCNERFKENCHKNEHLAKVHGVVGPLIKCQACDRSFASQQTWLLHMKKYHLMERQHKCTRCEKEFFSKRELTDHMVKHTGTREYRCDLCFKSYGRLKTLKEHIRRLHPEDRDFKCLHCGQSFDKSFALKCHISAKHGIRTIKIERRIATPRVELKIVRSHKEPHLSESKKNQQNLKLILLNSNANPIRNKDSLGYGCAFCHEQFPEPTNLKKHFLDEHNSDRLIKFMSSKLFDHVVKLDITYLNCALCNKDISKLEDLMTHLKTEHGKEIHTDIKSSIVPFRFDTPELRCAVCSAEYLNFKLLQEHMNSHFGNHICPVCGGGFMTERLLGTHVRRHKTGEFKCDECEKVFGNKEKLKEHQKRTHLGLGKRNKCLVCNERFLDYWKKIDHMVKVHGAPPVVLKCHACERTFRNQRALARHTKKDHLLERKHKCEECEMRFFSKSSLQRHMAKHTGIREFRCDICFKAYGRKNTLREHMRIHADDRRFACSHCGQAFVQKCSWRSHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01017935;
- 90% Identity
- -
- 80% Identity
- -