Vcar023877.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999935.1:4591764-4602323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0034 0.29 12.2 1.0 3 23 209 230 208 230 0.96 2 22 0.033 2.8 9.1 0.6 1 22 610 631 610 631 0.95 3 22 4.8 4.1e+02 2.3 0.3 1 22 673 694 673 696 0.82 4 22 0.92 78 4.6 0.8 1 14 705 718 705 726 0.79 5 22 0.0043 0.36 11.9 0.1 3 23 776 797 774 797 0.96 6 22 0.0072 0.61 11.2 4.4 1 23 803 826 803 826 0.95 7 22 0.089 7.6 7.7 0.0 1 23 852 875 852 875 0.90 8 22 0.013 1.1 10.3 3.4 1 23 880 902 880 902 0.97 9 22 0.0068 0.58 11.3 0.2 1 23 908 931 908 931 0.95 10 22 0.0056 0.48 11.5 1.6 1 23 943 965 943 965 0.97 11 22 0.001 0.087 13.8 4.0 1 23 1008 1031 1008 1031 0.96 12 22 0.003 0.26 12.4 1.6 1 23 1091 1114 1091 1114 0.96 13 22 0.00079 0.067 14.2 2.1 2 23 1138 1160 1137 1160 0.95 14 22 0.062 5.3 8.2 0.1 2 23 1166 1188 1165 1188 0.93 15 22 0.0071 0.6 11.2 0.2 1 21 1232 1252 1232 1253 0.95 16 22 0.00088 0.074 14.1 0.6 1 23 1263 1285 1263 1285 0.93 17 22 0.00019 0.016 16.2 0.4 2 23 1376 1398 1376 1398 0.93 18 22 1.3e-07 1.1e-05 26.1 1.1 3 23 1405 1425 1404 1425 0.98 19 22 0.029 2.5 9.3 0.3 3 23 1443 1463 1442 1464 0.94 20 22 0.086 7.3 7.8 0.0 1 23 1485 1507 1485 1507 0.97 21 22 0.02 1.7 9.8 0.6 1 23 1513 1536 1513 1536 0.95 22 22 0.00018 0.015 16.2 0.4 1 23 1544 1567 1544 1567 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTACTACCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTCGCTTCGAAAATTAAAGATTGCGTGTCAGTGCAGATAAGCGAAAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCATGGACAATGTTAATAACTGGCACATATTTAAGACTGTGTGTGAAAGAACACAAAACAAGTTACAGTCTCTTATAAATAAGGAGAGCAACCAACTAGAAGAGGTGAAAATAAAAAGTGAACCCTTATCTGATGAAGCATATGATGATGGAGTGGTCATTGATGGGTCATACCCTGATAGTGAGAATGCCTCATCAAATAGAGTGCAGCCTGAAGGACCGCCTATTTTGGCATCACTGGGGCTCACACCGAGAAGTGATAAGGGAATGGAGAGTGAGAAAGAAGAAAATGAAGATTATGAAGACGAGGAAGAAATGATGGAGCAACAGCAAACATTTACGCATATGCCTAATATGCCTGAAGTTTCCATTACTGTCATGCGTCCATCAGGAGAAACCTTGCATGCTCGCCAAGGTATTCAGCAGCTTGCATCCAAGGATTGTCTAGTGTGCGGGCGATCCTATAGGTACTCTCACAATGCTCGACGACATGAACTTACAGCTCATAACTTCGATAGATACACCAACAAGATTAATGCAAAGAAATCTCACGCTCACATGCAACCAAAATTCAGGCCGAACCCATTCAACCCTAAGGCCAGATTAATGCCAAATCCTATAAGCCACAAAATGCAGTTTCATTCAAAATCTATGCCACCTAAAATGATGCCTCAGAAGATCATTGCACCACCAAAGCCTATACCAATAAGAACAGGGAAAAATTCCCAAAATAACTTACCATACCCACTTCGCATTAAGGCTCTTAAAGACTTGCAAATTAAGAAAAAAGAACCTCAAATTTTAAAGACGCTATTAACTGCCAAGCCAGAAGTTCTAGTTTCTGAACCTGAAATAATTAATTCGGGGCCTGAAAGTCCAGAAACATTAATTTCAGAGCCAGAAATTGCCTCGTTTCAAGTAGAGGCAATTTTATCGGAGCCAGATGGTTATGTTAATCAACATGAGGATGACGAAATTGATGATGAAAACAATCAAGGACAAAATTATGACACTGTCGATATGGATTCAGAAAATGAGATTGAGATTGCTCGTCAGCAAGAAAATGATATACAAGGAGATGAAAATCACGAAGTTCATGATGAAGAAAATACTCAAGAAGATGAGAATAACCTGGAGGAGACAAATGACGATAACGAGAAAGAGAACCGTGAAGATAATGGCGAGAGTCAAGATAATATGGACGTAGAAAATAATATTGAGGAAGAAGCAGACCCAGACGATGTTAATGCCAAAGATAATGATGAAGAAAATGGAGAGAAAGAAAATGATGAACAAAATATCAATCATGAAGAAAATGAGGATGACGACGATTTGCCACCTATGAGTATAGCACCCGTTGTCGAAATTAACGAGGATTTGCAAACAAATTCTTATAATAGTGATGGAAATGAAGAACTCGATGAAACTGTAGATCCAAATGATGCAGTCGATGGCGATGAAGGTGAAAAAGATATCGATCCCGATAAAGTTTATATTACAAAAACGCAAAGAGATTTTATTCTCAAATATCGTGATATTATTCAACAAATTAATACAAAGCGGTGCATTTGCTGTAACAAAGAACACCCTCGACGAAAAGCAGTTATACAACATTTACAGAAAAACGGGCATAAAGTTCCTAAACATACATGTTACAATTGTGTGGTTACTTTTACTCATATTGGGGCTCTTCTCAGTCACATGAGATCAAATACTTGCACTGATCTTTGGAAAATAATATATAACGAAAATGGTATCACTGATGACATAGTTTTAGAAGTTGAGCCTAAAGATGTCAAAGTTCAATACAAAGATATACTTAATGCTAGATCTTACGCATGTAAATTATGTCCTGCGAAATTTCAATTAAAACAATTCATTATGAAGCATGTTCTTGATGTACACGAAGACGGTCAATCTCGTTTCCCTCATTCCTGTGTGCATTGTGGTTTACGATTTAAAGAAAAAAGTATAGGCAAGAGACACATACGTAACGGAGATTGCACAGTCGAAATCTGCTGTGAATTATGTTCCGAGAAATTTTTGAGCTTGCAAGAGTTTAATGACCATGCTGTAGCTGTACATGCAGGCAGCTTTGATCCTGATAATCAGAGCAAGTGTGTCGACGGTCGACCAACAGATTGTCCAATATGTGGCAAGAAGAATAGTAGTTACCCGAATTTGGTTAAACATTTAAAAATAATACATAATGAGGAAAAGCCTCATCACTGCCAACACTGTGATGCTAAATTCGAGCAAACTGCTGATCTTAACAAGCATATTTATATGGAACATTCTGATAGATCATTAGGTATGCATACTAATGAACCTGATATATCTCTTGTAAAAGAGGAAGCTGAGGAGTATCACTATTCATGTACAGAATGTAATGCTATATTCGAAACCGTCGATGCTTGGACGGATCATCAGGTGGCTGAACACAATCAGGTCGCTCATCACTGCGACCAATGTGAAAAGAAATTCTTGCGTCCATCAGAACTTGCAGAACATAAGAATACACATTTGCGAGTTAAATTCTATCCTTGTAGCATCTGTTCAAACTCGTACAGTACCCCGCAGAAGTTATCTGAACATGTCCAACAAGCCCACCCAGGAGCGAACACAAGGGGTGGTGAATCTGAATTTTTCTGCGACTTATGTATTCGATCATTCAAAAGCCGCCAAGCATATTCTAATCATATGCGTATTCATTCCAAAGTGCCTACCACTAACAGAAAACCTGGAGAAACTAAAGGTTTCGGACCTCAGATCATCGGAAAACCTATCCGTCATTTCTCTATGCAACCAGGTTTCAGTCCTTATGTTCCGAACGCACCTTATTGTTGTGATATTTGCGGTAAAGGATTCATGCACAAGAAAAATATATGGAAACATAAAAAGGTGCTCCATGCAGATCTGCTCAATGATAGGAACGATAGTGAGGAGAACACTATGCAAGCTTCTACCGAAGAAGATGATTATAATCTTGATGAAAACGGTGCGATTTTGTCGACTCCACAGTTTGATAGTTTTAATTTTACAAATCTTACTAATAATATGCAACAGACATCACAAGATGCTTTGCCATACTCCTGCGAATTATGTTATAAAAGATTTCCGCTTAGAACTAGTTTATGGAAGCACAAACGCGCTAAACATGGAATTATAAATGCCAGTGCAAGTGGTGCTTCGGAAACCCAAACACAGTCCTCGAATGAAGGCAGATCGAGCTGCACTATTTGTAAAATTACTTTTTCAGACAAAAAATCGTACTATCGTCATAGAAAAAATGTTCACAAGTCAACTGTTCAAATGTGTAAAATATGTGGAAAACCTCTTAACTCGACTTTAGAACTTTATGAACATCTGAAAGCAGCACATGCCCGAGAACTTTTGGGTTATAATGCGAATCAAAGCTCAAGCAAATCACAAGACATGAATCAAGAAATGGACATAGAATACGACGGTGATCAAGATTCAGTCGATCCTAGTGTTGATTATCAAGCCCGCTATCCCTGCGACACGTGTGGGAAACAATTTGTCGGATTATTGGCTCTACAAAATCATCAGTGCATCAACCAGATACAGAACCAGCCTCAAACGTTTGATTGTGAAATATGTCACAAGAGTTATACATCTATTGCTGCCTTAAAGAGCCACCGAGGCTGGCACCTGCGTTCCCCTGATGGTAAGGCCGCAGCTAATAATTCTGGACTTTGGATGCCTCAAAATAAAGTAACCAGTAAAGTGAGTAAACACGAAGTGGTGGATGCTATTCCAATTCCTCCTAAAACATCAACCTCGACCCCGGCCACGTTGGCCAAAAGAAGGTTACCCCCAGAAGTAGAAGTGACAGTCGTAAATCCTAATAAAAAATTGAGATCCGATGATTCCATCGAAATGGATCACCAGAACAACTTATCAGGGGGAGCCGAAGACAGATACTGCAACCTTTGTGACAAAGAATTTACAAAGCGAGCGGCATACCAGCGCCATATGGACGAAGTTCATCAGCCGAACTCTGTATTTTGTCCCGTCTGCGACAAGAGTTTTACGCGGAAATCTACTCTGATCGTGCATATGAAGAAACACTACGAGGGCGGGGAAGGGAGTTCTACACAAATGGAGGAAGACGTACAAGCGTGCGAAGTCTGTGGCGCCCAGTTCGATACTATGAAGGCCTTGAATTCACATCGGGCTTTACATCACGGCGAAGAATCCGCGGAGTCCGAGGACGACGGCGGGGCTATAGCCGCGCCCCCAGGCGAGTTCACGTGCGGGCAGTGCGGCGACGGCGTGGCCACTCCGCGCGACTTGATAGCCCACCGAACGATGCACGCGACTCCTACTAAATTTTTTTGTAATATCTGCAAGGTTTATTTTGCCCGAGCTCTCGATTTGTCCTCCCACACCCGAGCCAGACACTCGGACAACGAGAAGGTGTTCTTCCCCTGTGCTATGTGCGACCGGTTCTACATGAACAAGAAGAGTTTGCAAAGGCACATCGAAATGGCGCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDDSEPPVLASKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLQSLINKESNQLEEVKIKSEPLSDEAYDDGVVIDGSYPDSENASSNRVQPEGPPILASLGLTPRSDKGMESEKEENEDYEDEEEMMEQQQTFTHMPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHNFDRYTNKINAKKSHAHMQPKFRPNPFNPKARLMPNPISHKMQFHSKSMPPKMMPQKIIAPPKPIPIRTGKNSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDGYVNQHEDDEIDDENNQGQNYDTVDMDSENEIEIARQQENDIQGDENHEVHDEENTQEDENNLEETNDDNEKENREDNGESQDNMDVENNIEEEADPDDVNAKDNDEENGEKENDEQNINHEENEDDDDLPPMSIAPVVEINEDLQTNSYNSDGNEELDETVDPNDAVDGDEGEKDIDPDKVYITKTQRDFILKYRDIIQQINTKRCICCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEVEPKDVKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRFPHSCVHCGLRFKEKSIGKRHIRNGDCTVEICCELCSEKFLSLQEFNDHAVAVHAGSFDPDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHHCQHCDAKFEQTADLNKHIYMEHSDRSLGMHTNEPDISLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQAHPGANTRGGESEFFCDLCIRSFKSRQAYSNHMRIHSKVPTTNRKPGETKGFGPQIIGKPIRHFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDDYNLDENGAILSTPQFDSFNFTNLTNNMQQTSQDALPYSCELCYKRFPLRTSLWKHKRAKHGIINASASGASETQTQSSNEGRSSCTICKITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSSKSQDMNQEMDIEYDGDQDSVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQIQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDAIPIPPKTSTSTPATLAKRRLPPEVEVTVVNPNKKLRSDDSIEMDHQNNLSGGAEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTQMEEDVQACEVCGAQFDTMKALNSHRALHHGEESAESEDDGGAIAAPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078400;
- 90% Identity
- -
- 80% Identity
- -