Vcar021156.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999945.1:443746-451279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.67 57 5.0 1.8 1 23 355 377 355 377 0.96 2 21 4.8 4.1e+02 2.3 0.2 6 23 389 407 389 407 0.94 3 21 4.6 3.9e+02 2.4 0.1 2 23 417 439 416 439 0.88 4 21 1.9e-07 1.6e-05 25.6 1.3 2 23 462 483 462 483 0.97 5 21 0.00055 0.046 14.7 1.5 1 23 492 515 492 515 0.93 6 21 0.029 2.5 9.3 0.1 1 23 521 543 521 543 0.94 7 21 4e-05 0.0034 18.3 1.3 1 23 549 571 549 571 0.98 8 21 0.00038 0.033 15.2 6.9 1 23 577 599 577 599 0.99 9 21 1.2 1e+02 4.2 3.1 1 23 719 741 719 741 0.95 10 21 2.2e-05 0.0019 19.1 2.8 2 23 748 770 747 770 0.92 11 21 1.9e-06 0.00016 22.5 2.1 1 23 776 798 776 798 0.98 12 21 2.3e-06 0.0002 22.2 3.5 1 23 804 826 804 826 0.98 13 21 0.00098 0.083 13.9 0.7 1 23 832 854 832 854 0.97 14 21 6.8e-05 0.0057 17.6 1.1 1 23 860 882 860 882 0.95 15 21 0.027 2.3 9.4 5.1 1 23 888 911 888 911 0.92 16 21 0.14 12 7.1 0.1 2 23 977 997 977 997 0.93 17 21 2.1e-05 0.0018 19.1 0.0 2 23 1003 1025 1002 1025 0.95 18 21 0.00063 0.053 14.5 0.6 1 23 1031 1053 1031 1053 0.92 19 21 2.3e-05 0.0019 19.1 0.8 1 23 1059 1081 1059 1081 0.98 20 21 0.00051 0.043 14.8 0.2 1 23 1087 1109 1087 1109 0.94 21 21 0.0021 0.17 12.9 0.1 6 23 1119 1136 1118 1136 0.99
Sequence Information
- Coding Sequence
- ATGACGGCGGATTTACCGAAAAACTCACGACATACCTGTTATTTCGGGTGTAAAGTTGCTGGCCCATTACATCATTTCCCTGTGCCTGAAAGAGATGTAGAAAGGTTTGAAACCTGGAAGGCAGTGTTGGAGAATGACGCTAAAGAAAAAGGAAACACTTACATCTATAACCAACTGCGGTTATGCAATAAGCATTTCGAAAATTATTATGTATTACCAAGCAACAGGCTAACAAGAAATGCTATTCCAACTCTGTGTATTAAGAAAGATGATATTATGTCTATTAGTCAATCAATATCCACAGAAAATTCTGTTGATATTGATACCTGCGGTACCAATCTCAACGGTTTTCAAGTTCTGATGGATGAGGCTGCTATAGAAATTACTAAATTTGACATACAACAAATATATGTGCCAGCAATGGACGATTTATCAAACATCTGTCGTATTTGCGGGGTTATTAATGTATCTCTCATACCGTTGTTTGGCGAGGACGCACAGAAAAATGAACTTGTCCAGAAAATAAATAAATATTTACCAATAACGGTGTGCGAACAAGACAGTTATCCCCTGGGAATATGCCAAAACTGTGCTAGCACAGTGCTGAACTGGCATGAACTGGCACAATGCTGTATTAAGACTGAAAAAGAACTGACTTCAAAGCTGAAGGCGAGCACACAGCCTGACAAATGCAGTGGACACCAAAACAATGTACAAGCAGGTAGTTCTTCAGCCGCTACACATGGAGAGGCTCGTGAAAGGTTATCAGCCCCTTGTTTAATTTTAATAATAAAAGAAGTCCTGAACAATGTATACTTCAAGATAATGAATATGGATGAAGAAAACTCTGACTTAATGTATGTCTGCCAAATGTGCCCCGACAAAGCTGCTTCAACGTCAGTACACAGCCTGTGTGAGCATCTGATAGCAAATCACAAAGAGCTTAATGATATGACATCTGTGGAAGCGTTTATCAAAGAAAACATTACATTCGAGGAAGTTCTGGCAAATGACGCCGTCATCGACGACGAGCTGGAGGATCAAGTGGCAGAAATACCGAATTATTTTTGTCCCTTTTGCGAGAGTGCGTTCTCATCGCCCACGCGCCTCGTGTGCCACTTAAACCGACACATCGAAGTGAGCATCGACGATGGAGTTCTCTGCTGCGACCGTCTGTATGCCGATAAGAAATCTTTCGTCACACATTTGCAAGAAAAACACGTGAACAGATCGACAGAGGGAGCTCTGATTTGCAAAACTTGCGGTTTAATCGAGAAAGATCACGACGCCTTGGCAGCTCACGTAATCGAGCGACACGCGGACGTCGAGGAGCGAAAGAAGAAGACGGAACCGAACCTCCGATGCCAGAAGTTCATTCCGGCCGTGTGCCCGGAGTGCAACAAGTCGTTCTCTAACAAATACAACATGCTCACTCACATGAAGACCCACACCAGTGAACTCTCCACCAGCAAATTCATGTGCATCAAGTGTAACAAAACCTACAAGAGCCGCGGCAGCCTCACGTATCACCAGAGAGTGGTCCACGAAGGGGTACTTCCGTTTCTGTGCTCCATGTGTGGGGAGGCGTTTCCGTCGCGCACGGCCAGAGACACACACGCGCGCATCCACACGGGGGCGAAGCCGTTCACTTGCGATTACTGCAACAAGTCTTATCGCGCCCAGAACACCCTCAGTCGACACATAGACATGCACCTGAATATACGGAACTACGAGTGCCACCTGTGCCCCAAGAAGTTCAGGAAGAGAACCCACCTCGACTACCATTTAAAAACACACGAAAGGAAGAATGAACGGAGAGTAAAGGAACGCGACTCGGACGAGACCGCGGGCGGCGCCTCTGATGACGACCGGCCTCTCGCGAGCATAGCGACCAAAAATGCCAAAACAGATCTTTACCAAAAACTGTATGCCGCCCTTGTAAACTTTCGAAATCATTTCACGACGGAACACGACGGCCACACCTATTCCGACTTCTCGGATTCCAGCACGACTGATGACGAGGAGACGGGGACGCAGGAGAGTTTAAACAGCTTCGACGACTTGACGCACAGCAACATGCGCAAGGACAAGATGGACGAAGAGACGCGGCTCGAGCTCAGCCAGGCGCAAACCAAGATCAACGGGAAGGTGTACTTCACGTGCGCGACGTGCGGCAAGAACCTCAGCTCGACGCACACCTACATATTCCACAAACGCATACACACGGGCGAGCGGCCGTGCGTGTGCCACATCTGCGGGAAGCAGTTCCGCACGCCCAACGGACTGCAGAGGCACCTGACCGAGACCCACGAGAAGCAGCGCCGGTACATCTGCGTCATGTGCCACAAGAACTTCGCCAACTCGCAGAACCTCAAACAGCACATGAGGATCCACACGGGCGAGCGGCCCTTCGTGTGCGCGCACTGCGGCAAGCGCTTCACGCAGAGCGGCTCGCTGCACGTGCACCTCAAGACGCACAGCGAGCACTTCCCGCACCGCTGCGCCGAGTGCGGCGCCAAGTTCCGCCTGCGCGCCGGCCTCGCGCGCCACCGCCTCAAGCACACGGGGGAGCGCCCGCACGCCTGCGCGCTCTGCGGGAAGGCCTTCCGCCAGCGGCACGAGCTCGCCAGCCACGCGCTCACGCACTCCGACGCCAAGCCGCACGCCTGCGCCCTCTGCGGCACCGCCTTCCGCCAGCGGCGCGCGCTGCGCCACCACTGCCGCCGCCTGCACGAGCCCCACGCCGGGGACGCCGCGCACATGGTCTACGGCCACGCGGGACACTACGAGGAGCGTACTCTCAATTTGCTTTTCAGCGCGGTAGGCACCTCGAAACGCGACGAGGTGCCGGAGGTCGAGGCGCCGGAGGACGAGGCGAGCGCCGCGAGGCCGAGGGCGATCGTGGTGGAGGGCGGCAAGCGCTACGGCGAGTGCGGCGTGTGCGGCAAGCGCGTGCGCACGGCGGGCTGGCGGCGCCACGCGCGCTCGCACGGCGCCGCGCGCCTGCGCTGCCCCGCGTGCGGCCGCGCCTTCGCCGACGCCGCCAACCTGGCGCGCCACCTGCGCGCGCTGCACCGGCGCCTGCGCCCGCACGCGTGCCCGCTATGCGCGCGCCGCTTCTCGCGCGCCGGCCACCTGCGCGACCACGTGGACGCGCACTCGGGCCGGCGCGAGCACGTGTGCGACGTGTGCGGCAAGGCGTCCAAGTCGCGCGCCGCGCTGCGCATGCACCGCCGCACGCACGACGCGGCGCCGCGCCACGCCTGCGCGCGCTGCGGCGCCGCCTTCAAGCGCCGCGCCCAGCTGCGCGCGCACGAGTCCGTGCACACGGGCCGGCGCGACCACGTGTGCGCCTGCGGCAAGGCCTTCCGCCTGCGCAGCCAGCTCGCCGCGCACGCGCGCCGCCACGCCGCCGCACCCGCACCCGCCGCGCCCAGCTGA
- Protein Sequence
- MTADLPKNSRHTCYFGCKVAGPLHHFPVPERDVERFETWKAVLENDAKEKGNTYIYNQLRLCNKHFENYYVLPSNRLTRNAIPTLCIKKDDIMSISQSISTENSVDIDTCGTNLNGFQVLMDEAAIEITKFDIQQIYVPAMDDLSNICRICGVINVSLIPLFGEDAQKNELVQKINKYLPITVCEQDSYPLGICQNCASTVLNWHELAQCCIKTEKELTSKLKASTQPDKCSGHQNNVQAGSSSAATHGEARERLSAPCLILIIKEVLNNVYFKIMNMDEENSDLMYVCQMCPDKAASTSVHSLCEHLIANHKELNDMTSVEAFIKENITFEEVLANDAVIDDELEDQVAEIPNYFCPFCESAFSSPTRLVCHLNRHIEVSIDDGVLCCDRLYADKKSFVTHLQEKHVNRSTEGALICKTCGLIEKDHDALAAHVIERHADVEERKKKTEPNLRCQKFIPAVCPECNKSFSNKYNMLTHMKTHTSELSTSKFMCIKCNKTYKSRGSLTYHQRVVHEGVLPFLCSMCGEAFPSRTARDTHARIHTGAKPFTCDYCNKSYRAQNTLSRHIDMHLNIRNYECHLCPKKFRKRTHLDYHLKTHERKNERRVKERDSDETAGGASDDDRPLASIATKNAKTDLYQKLYAALVNFRNHFTTEHDGHTYSDFSDSSTTDDEETGTQESLNSFDDLTHSNMRKDKMDEETRLELSQAQTKINGKVYFTCATCGKNLSSTHTYIFHKRIHTGERPCVCHICGKQFRTPNGLQRHLTETHEKQRRYICVMCHKNFANSQNLKQHMRIHTGERPFVCAHCGKRFTQSGSLHVHLKTHSEHFPHRCAECGAKFRLRAGLARHRLKHTGERPHACALCGKAFRQRHELASHALTHSDAKPHACALCGTAFRQRRALRHHCRRLHEPHAGDAAHMVYGHAGHYEERTLNLLFSAVGTSKRDEVPEVEAPEDEASAARPRAIVVEGGKRYGECGVCGKRVRTAGWRRHARSHGAARLRCPACGRAFADAANLARHLRALHRRLRPHACPLCARRFSRAGHLRDHVDAHSGRREHVCDVCGKASKSRAALRMHRRTHDAAPRHACARCGAAFKRRAQLRAHESVHTGRRDHVCACGKAFRLRSQLAAHARRHAAAPAPAAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01508245;
- 90% Identity
- -
- 80% Identity
- -