Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999929.1:5241179-5267161[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.3e-05 0.0062 17.5 2.2 1 23 411 433 411 433 0.97

2 20 0.0053 0.45 11.6 0.7 1 20 439 458 439 461 0.94

3 20 2.8e-05 0.0024 18.7 4.4 1 23 480 502 480 502 0.98

4 20 0.00017 0.014 16.3 4.7 1 23 508 530 508 530 0.99

5 20 3.2e-05 0.0027 18.6 5.3 1 23 536 558 536 558 0.97

6 20 1e-05 0.00088 20.1 7.3 1 23 564 586 564 586 0.97

7 20 6.5e-07 5.5e-05 23.9 2.9 1 23 592 614 592 614 0.97

8 20 9.2e-05 0.0078 17.1 6.7 1 23 620 642 620 642 0.97

9 20 0.00021 0.018 16.0 5.6 1 23 648 670 648 670 0.97

10 20 4.4e-07 3.8e-05 24.4 1.9 1 23 676 698 676 698 0.98

11 20 8.8e-06 0.00074 20.4 7.7 1 23 704 726 704 726 0.98

12 20 7.2e-06 0.00061 20.6 6.6 1 23 732 754 732 754 0.98

13 20 2.4e-05 0.002 19.0 7.1 1 23 760 782 760 782 0.98

14 20 8.6e-06 0.00073 20.4 6.4 1 23 788 810 788 810 0.97

15 20 2e-05 0.0017 19.2 7.1 1 23 816 838 816 838 0.97

16 20 2.8e-06 0.00024 21.9 6.0 1 23 844 866 844 866 0.98

17 20 0.00012 0.01 16.7 10.0 1 23 872 894 872 894 0.97

18 20 2.5e-06 0.00021 22.1 5.8 1 23 900 922 900 922 0.98

19 20 0.00049 0.042 14.8 0.3 1 23 929 951 929 951 0.96

20 20 0.013 1.1 10.4 5.5 1 23 962 984 962 984 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.3e-05	0.0062	17.5	2.2	1	23	411	433	411	433	0.97
2	20	0.0053	0.45	11.6	0.7	1	20	439	458	439	461	0.94
3	20	2.8e-05	0.0024	18.7	4.4	1	23	480	502	480	502	0.98
4	20	0.00017	0.014	16.3	4.7	1	23	508	530	508	530	0.99
5	20	3.2e-05	0.0027	18.6	5.3	1	23	536	558	536	558	0.97
6	20	1e-05	0.00088	20.1	7.3	1	23	564	586	564	586	0.97
7	20	6.5e-07	5.5e-05	23.9	2.9	1	23	592	614	592	614	0.97
8	20	9.2e-05	0.0078	17.1	6.7	1	23	620	642	620	642	0.97
9	20	0.00021	0.018	16.0	5.6	1	23	648	670	648	670	0.97
10	20	4.4e-07	3.8e-05	24.4	1.9	1	23	676	698	676	698	0.98
11	20	8.8e-06	0.00074	20.4	7.7	1	23	704	726	704	726	0.98
12	20	7.2e-06	0.00061	20.6	6.6	1	23	732	754	732	754	0.98
13	20	2.4e-05	0.002	19.0	7.1	1	23	760	782	760	782	0.98
14	20	8.6e-06	0.00073	20.4	6.4	1	23	788	810	788	810	0.97
15	20	2e-05	0.0017	19.2	7.1	1	23	816	838	816	838	0.97
16	20	2.8e-06	0.00024	21.9	6.0	1	23	844	866	844	866	0.98
17	20	0.00012	0.01	16.7	10.0	1	23	872	894	872	894	0.97
18	20	2.5e-06	0.00021	22.1	5.8	1	23	900	922	900	922	0.98
19	20	0.00049	0.042	14.8	0.3	1	23	929	951	929	951	0.96
20	20	0.013	1.1	10.4	5.5	1	23	962	984	962	984	0.99

Sequence Information

Coding Sequence: ATGAATCCTGATCATCATAATATAAACACGGGTGGTGGCCAACCTCCAGGCAATTCTGAGGCTCAAAATCAAAGAGTGCAATCAACGCAGCAACAGCAGCAGGGTCAAGCTAATAACTTGACTCCGACAACATCTGCTACTGATTTGAGAGTAAACTCAGCGGCGGTAAACGTTGCTTTGTCAAGCGTGGCCAAATACTGGGTGTTTACAAATTTATTTCCCGGTCCTATACCGCAGGTTTCCGTATATGGTTTACCCACTGGTGCAAGAATTGAAAATGGGAAGCCAGTACAGGATCTTGGGCAGGCTCATGCAAGTCTTCTAAATGGAGATCCTAATATTATATTAGGACATGCAGGACAACAACAAGTTACTGTTTCAGCAGGGGGTCAACAAATTCCCGTCTCACAGATTATTGCAAATCAAGCTACACAAGGCCATGAGTCTCTGGTGGCGCACGGCGCGGCGGAGGGCGGCGGCGCGGCGCTGTCGGTGGCGGGCGCGCAGACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACATAACATTGATATGGGTCATCACTCCCAGCAACATATAATGCAGCAACAGCTGATGGCTGCGACCCGTCCAGAACATTCAAATCAACAGATCCAACTGACGGTAAGCGAGGACGGCATCGTAACGGTGGTGGAGCCGGGCGGCGGCAAGCTGGTGGACAAAGACGAGCTGCACGACGCCATCAAGATGCCCAACGACCACACGCTCACCGTGCACCAGCTGCAGCAGATTGTGGGCCACCACCAGGTCATAGACAGCGTGGTCCGCATCGAGCAAGCCACGGGCGAGCCGGCCAACATCCTCGTGACGCAGAATCCGGACGGCACCACCTCCATAGAGACGAGCGCCGCCGACCCGCTCATCGTGAAGGACGAGAAGAACGTCGCCAAGATTGAGTCCACGCAGTTCGCGATACCCGCCGAGATTAAAGATATCAAGGGAATTGACTTGAAGAGTGCTATGGGTATGGAAGGAGCGGTGGTCAAAATATCCACTGGCACCGAACATGATCTACACGCCATGTATAAAGTTAATGTAGAGGATCTATCACAATTGCTAGCCTATCATGAAGTATTTGGAAAACTAAATTCTGAAGGTCAACAACAAGCAAAGGTGATCAGCGAGGTGGAAGTGGAGGCGGGCACGAGCGCCGCTCTGTCGGAGGCCGAGTCGTCTCCCGGGCACCACTCCTGCGACATCTGCGGGAAGATCTTCCAGTTCCGGTACCAGCTCATCGTGCACAGGCGATACCACGGTGAGAGCAAGCCCTTTACGTGTCAAGTATGTGGTTCTGCGTTCGCCAATCCAGTAGAACTTTCAAAACATGGAAAATGTCATTTGGCTGGTGACCCCGCCGAACGCCAAGCGAAACGATTGGCTCAAGACAAACCGTACGCGTGCTCCACCTGCCATAAAACATTCGCACGGAAGGAACATCTCGACAATCACGTCAGGAGCCACACCGGGGAGACGCCATACAGATGCCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCATTTCATGAACCACGTCATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCACATACAAATGACACTCCATTCAGATGTGAACTGTGCGGCAAGTCCTTCACGAGAAAGGAACACTTCACCAATCATATACTGTGGCATACGGGTGAAACCCCACATCGTTGTGACTTCTGTTCGAAGACGTTTACGCGCAAGGAACACTTACTTAACCACGTGCGCCAACATACGGGCGAGTCTCCCCATCGGTGCAACTTCTGCGCGAAATCCTTCACACGTCGCGAACATCTCGTCAATCACGTTCGCCAACATACGGGCGAAACTCCATTTCAATGTGGTTATTGTCCTAAAGCGTTCACTCGAAAAGATCACCTTGTGAATCACGTTCGCCAGCACACCGGAGAGTCCCCTCACAAGTGTTCCTATTGCACAAAGTCATTCACGCGCAAGGAACATCTAACCAACCACGTGCGGCAACACACGGGCGAGTCCCCACACCGGTGTACATACTGCGCGAAGTCCTTTACGAGAAAAGAACATCTAACTAACCATATACGACAGCATACGGGGGAGACTCCTCACAAGTGCACGTATTGCTTTCGCGCCTTCACGCGGAAGGAACACCTCAACCAACACATCAGACAACATACCGGGGACATGCCACATACCTGTTCATATTGTAACAAGAGTTTCACGAGGAAAGAACATCTTGTCACGCATGTTCGACAACATACTGGCGAGACACCATTTAAGTGCACATATTGTTCAAAGTCATTTTCTCGCAAGGAACATCTCACGAACCATGTGCATCTTCATACAGGCGAGACACCACATAAATGTCCCTTCTGCACCAAGACCTTCTCGAGAAAAGAACATTTGACTAATCATGTTAGAATACACACCGGCGAATCACCTCATCGATGTGAGTTTTGTCATAAGACATTCACACGCAAGGAACATCTCACGAACCATCTCAAACAGCACACTGGCGACACGCCACACACTTGCAAAGTGTGCTCTAAGCCCTTCACGAGAAAGGAACATCTTATGACGCATATGAGATCGCATAGTTGTGGAGAAAGGCCATACAGTTGCGGTGAATGTGGGAAGTCGTTCCCATTGAAAGGCAATTTATTATTCCATGAAAGATCGCACAACAAGAGTGCAAACTCGGCAAATAAATCTTTCCGATGTGAAATTTGCTCAAAAGAATTTATGTGCAAAGGTCATCTAGTAACGCACAGAAGAACACATACAGATGCAGTTGAAAATGCAGTAACTACGGAACCTGCAACTGAAGGCGAAGACTGCGGAGATTGCAATAAATGCGAGAAAGATGTGCCAGACAGAACAGAGAGAAAACATGATACAAGAGCATCATCAGAGAGTAGAGCCAGTGAAACAAATGTGGCACAAACTCAAACAGCTAGTTCAGCCGTTATGCAAATTACTAGCCAGCAAGTCCGAACTGGAACTGCAACCAGTGTAGCCAGTGTGGCAGCTGGCACATTCACTCACACCACAAATACTCAACACCATACTGGCACGACCATAGCACATCATCCGGTCACTGTGAATTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGNSEAQNQRVQSTQQQQQGQANNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQAHASLLNGDPNIILGHAGQQQVTVSAGGQQIPVSQIIANQATQGHESLVAHGAAEGGGAALSVAGAQTQQVPNNRVEFVQHNIDMGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKDELHDAIKMPNDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLIVKDEKNVAKIESTQFAIPAEIKDIKGIDLKSAMGMEGAVVKISTGTEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQAKVISEVEVEAGTSAALSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCFRAFTRKEHLNQHIRQHTGDMPHTCSYCNKSFTRKEHLVTHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHTCKVCSKPFTRKEHLMTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKSANSANKSFRCEICSKEFMCKGHLVTHRRTHTDAVENAVTTEPATEGEDCGDCNKCEKDVPDRTERKHDTRASSESRASETNVAQTQTASSAVMQITSQQVRTGTATSVASVAAGTFTHTTNTQHHTGTTIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00247403;
90% Identity: iTF_01078391;
80% Identity: -