Basic Information

Insect: Vanessa cardui
Gene Symbol: Hr39
Assembly: GCA_905220365.1
Location: LR999926.1:3182182-3193419[-]

Transcription Factor Domain

TF Family: SF-like
Domain: zf-C4|SF-like
PFAM: AnimalTFDB
TF Group: Zinc-Coordinating Group
Description: The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2 2.6e+04 -6.4 9.7 78 161 207 310 138 363 0.50

2 3 2.5e-08 0.00032 20.8 0.1 1 21 444 464 444 484 0.88

3 3 4.1e-65 5.4e-61 207.8 0.0 157 408 502 762 473 762 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2	2.6e+04	-6.4	9.7	78	161	207	310	138	363	0.50
2	3	2.5e-08	0.00032	20.8	0.1	1	21	444	464	444	484	0.88
3	3	4.1e-65	5.4e-61	207.8	0.0	157	408	502	762	473	762	0.84

Sequence Information

Coding Sequence: ATGAATACCGCGATGTCGAGCGAGGAGGCGGTGAAGGTTGAAGGGGGACATGTCTCCGTCACAACCATCAGCATGTCTGGTCCTGAAACTAGCAACGGTCAGTTCTCCTACAGCTCGAGTGGAGTACGCATCAGCGTTTCTTCAGAGCCCCATGATGAGGATTCTACTGATGCTGAAATCTCCAAAATCGATTTCACGCAACATCAGTATGAGGTGAACATGAGAAACAAAAAGAAGCGTTCGTCAAGTGGACAGTGCGAACAGAATTCGGAACAAGAACGTCCTATGTCTTGGGAGGGGGAACTCTCCGACTCTGAAATGGTTATCGACACCAGTGTCAACAATGATGAAAACAGCAGCTCACTCGACTTACAATCCTCGCGGGACTCCATCGACACTCTTCGAAACGTGACCATCAAAACAGAGATACTCAGAGAAGATCCTCTCAAATTAGAAGCGTTTCAGAGTTTGGACGACCAACGAGTCCTGGACCTTAAATACACAGTTCCCTTGCAATCGCACCAGCGGAGTCTCAGCATGAACAGGATATCAGTACTAACGGACAACGCGTCGCTATCCCTCGCGAGACGACCGTCATCGCCCACTAGCAGCGCTAAGTCGACAATGTCTGACCAGTACGATGCACAGCTCATGCAAAATCCAGTCGTAGAAGTTCAGAACTTGACGATCAAGAAAGAAACTCAATTATCTGAGTTAAAATGCGAGCCATCAGTGGGTATGGACAAATTATTAGGTCTCCACGGGTCGCCGTTGCTAGGCCGGCTGCCTCGGGTCCAATCCAGTGCCAGTACGGATTCCGCCGTACATTCTATGTACACGCATAGCGTATACAGTAGTCCTTCAGCTAGTCCTCGTCCGTCTCGTCACTATACGCCATCTCTTTCTCGCAACAACAGCGACGCATCGCACTCATCGTGTTACTCATACAGTTCTGAGTTCTCACCTACTCATTCGCCAGTTCAGGGCCGACATCCTCACGTGGTATACCGCGAGGCTACAGTCTTCCCCGCTTCACCTGCCCACGACGAAGATACGGATACAACTGATGAACGCCTTCATCATCACCAGGGTATAAGCAGACAACAACTGATTAATAGCCCATGTCCAATCTGTGGTGACAAGATAAGCGGTTTCCACTACGGGATATTCTCCTGTGAGTCTTGCAAGGGATTCTTCAAGCGGACCGTACAGAACCGGAAGAACTACATGTGTCTTCGCGGCGGTAACTGCCCCGTCACCGTCGCTACGAGGAAAAAGTGTCCTGCCTGCAGATTCGACAAGTGCTTGGGATGTGGAATGAAGCTCGAAGCGATTCGGGAAGACAGGACGCGCGGCGGGCGCTCGACGTACCAGTGCTCGTACACGCTGTCGGGCGCGGCGTCCACGGGCTCGCTGCTGTCCGCGCACGCGCCCGCCACGCTGCGCCACGCCTCCAGCCTCACCTGCGTAAATGGTCCAGGATCGTATACCAGTCGAGGAGAATCAAGCAACAGCCGACTCACGCCTGACATACCGCCATTATTACAAGAAATAATGGACGTGGAACATTTGTGGCAATACAACGAGTCGGAGCTGAGCCGGATGAGCAAGTCGTCGGGCAGCCCGTCAGCCAACCCGCTGCTGGCCGCCAGCGGCATCACGGCGCAGAACTCCAGCGCCGACTTCCTCGCCGACCTGTGCAACATCGCGGACCACAGGCTATACAAGATCGTCAAGTGGTGCAAGAGTTTGCCGCTCTTTAAAAACATTTCGATCGACGACCAGATCTGCCTGCTGATTAACAGCTGGTGCGAGCTGCTAGTGCTGTCGTGCTGCTACCGCGGCGTGAGCACGCCGGGCGAGGTGCGCGTGGGCGGCGGCCGCGGGATCACGCTGCACCAGAGCGCCAAGTATGGTTTGACACCGTGCATAGAACGAATGCTGAGTTTCACGGATCACTTGAGGAGGTTGCGAGTGGACCGATATGAATACGTCGCTCTCAAAGTTATTGTATTACTCACTTCAGACGCACCGGAATTGCGTGAAGCGGAAAAAGTGCGAGCGTCCCAAGAGAAAGCGCTCGCAGCGCTGCAGGCGTACACCGCGACGCACTCGCCCGACACGCCCGCCAAGTTTGGCGAACTGCTCCTTCGTATACCCGAGTTACAACGAACCTGCCAGTTTTTCATGCAAGTCGGAAAGGAAATGCTTAACCCGGCTAATAAGGGCAAGGACGGTGAGGGTCCGAGCTTCAATCTCCTCATGGAACTTCTGAGAGGCGACCATTGA
Protein Sequence: MNTAMSSEEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSEPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGQCEQNSEQERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEILREDPLKLEAFQSLDDQRVLDLKYTVPLQSHQRSLSMNRISVLTDNASLSLARRPSSPTSSAKSTMSDQYDAQLMQNPVVEVQNLTIKKETQLSELKCEPSVGMDKLLGLHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPSRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREATVFPASPAHDEDTDTTDERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAASTGSLLSAHAPATLRHASSLTCVNGPGSYTSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELSRMSKSSGSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKGKDGEGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00985246;
90% Identity: iTF_01018623;
80% Identity: iTF_01507315;