Vcar016013.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vanessa cardui
Gene Symbol
baz-2
Assembly
GCA_905220365.1
Location
LR999952.1:4514373-4536040[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-10 8.8e-07 29.0 0.0 4 75 614 688 611 690 0.84

Sequence Information

Coding Sequence
ATGCTCCAGTTTCAATTCGATTTCGGCCTAGCGTATTGGGGTCGAGATGGTGCTGCAGGCGGGGCGGCGGCCCAGGCACAAGCACAGGCGCAGGCGCAAGCGGCACTCTTCGGCTTCGGGTCGCGCTACCCCCCACCCACCACGCTCGGCGTTGCTGCCAACCAAGCCGCGTCACTTGGACTGCATCCCGCTGCGAGTGCAGCATGGTGGTCCATGGCTTCGCATCTTGCAGCACAAGATTACCTAGCTAGGCTGCAAGCGTCGGGGCTGAATTTCCCCCCACTCGGCGACCCCTACGCGGCCCTGTCCGCTCTATCAGGCGCTGGTATGAAGCAGCCATCCAAACCTGCGAAACAATCAAACAGAAGCGAAAGTTTATACAGCAGGTCTGGTCGAAGCAGTACGTCATCCAGCATGTCCACGAAGGACAAAAGTCCAGCTACCAGCACGTCTAGCTCTCAGCCCAATATGGCGGATTGGGGTGCGAGCTATGGTTTCCCGAAGACCTCGTCTCCTTCAACGATGCCCTCCCAGTCAATGTCTAGCCTGGCGTCGCTGAATAATCTCGCACAGCAGCCACTGCATTCCAAACCCAATAAACCACAGCATCCCCCGTCTTCCAGGAAGAGTGGGTCCAGCAAGGACAAGGAGCTAATGTTGGCGCACGCGCACTCCGCGTACCACGCCGCGCTAGCCGCGCACAAGGGGAAGAATATGTCCCCACTGTACCCATTCGGAGTGGGGGGAGATAAGGACCGTAGGGGTGGCATAGACTCCCTCACAGGTCTACCGCATACCATTCTCAGTGATCCATCGTCAGTGCTGGGTGGAGTGAGGCTGCCTCCAGACACGGAGATCATTAAATACACGTCCTCTTTAGCTGGACCCAAGGCGCAGCCGGGCTCGACGACGCGCGGGCGCAAGAAGACAATCTCGCTGGACCCGCCGCACGTGTCCGTGCACCCCGCCGAGCGCGCCAGCAAGCGACAGAAAGTCGACGAGTACGGCAACTCTCGTTCGTCAGTGGAAGTAATCCGGCTGCCCAACAAGCCGGAGCGCTCCGGAGCCAACTCGGTGTCCGGGACTCCGCCGCCGAACCTCTCTGATTACGCAGGTATATCTCGGGAACTACTACAAACAATAGCAAGTCAAAGTGGCGTCAGCTTGGCAGCTTTGGAGCGACAGCTGGCCGGATCGGCGCCTGCGTCCGGCTGTGTATGTTATAGTATACCGATTAAAGTGTTAGAAGGGTCTAAATATTTTAAAGCTCTGCTTCCAGACTCAGGTCTGAACCTGAGCACGAAGTCTGGTGGCTCCGAAGACGCTCCTCTAGACCTCGGTCTGAAGACTGACGACGACGCACCACTCAACCTCTCGCTGAAGCCCACACCGCCGAGCTCGCAAGCATCGGATGCACTCTCCCGACTCACGTCGCTGAGCAGTTCACTCAGCGCTTCGAATGACAGGATATCGCGTCGCAAGCCGGGCGCCAAGCCGCGTCGCGTGGCGCCCGAGATCAACGCGCACGTGGCCGACTCGCCGCGCCCCAAGTCCAGCGGCAGTGAGGACAGCGAGTCGGTCCCCGCCTGGCCCGCGCGGGAGGGCAGGCCCCGTAACTTGGGTCGGGGCGTCAGCAAACCCAAGAAGAATACTGTGGCTTCTCTTTTAGCGCAGAGCAGAGCGCTAGGCCTGCGCCCCGCGCTTGCGCAGCACCTGCTGGCCGAGACCGACCTGGATAAGTTGCGCGCGCTGCTGTGCGAGGGCGGCAGCACGGACTCGGAGTGCCCGTCCGACAGTAACCCGTCAGACTCCGACGCCAGCGACGGCGGCCGACGCCATGACGCCACGCTGCGCCTACCACTCGCCCTCGGCTGGAAGCGCACGACGGTGATCAAGGGTCTGTCGCGCAACTGCAACATCAAGGGCGAGGTGAGCTACAGCGCGCCCGAGCCGCACCACCACGTCGTCGTCAAGTCGGCGCACGAGCTGCAAGCGTTCCTGGACGCGAACCCCAGTCCCCCGCTGTCGCGTGACAACTTCAGCTTCAGCGCTCGCACGCTGCTGGGCGACTACCTGCAGCCCGCCGACGGCGCCGAGCCTCTCGTACTGGGCGAGGCAGAGATCATCAAGCGGCTGGAGGAGGCACGAGCGCTGGCGGCCCTGAGTGGGAGGCCCACGCCGCCGCCGCTGGAGCGCCGCATGGAGCTTGCACGGCGCCAGCAGGCCGCCCGAGACGCGCGCCGCGACCACGGACAGCGCGGACGCGACCAGGCTCGTCTAGTCAGAGAATTGGAAAGATCGGAGAAGGCTGAACTGGTTAAACGTGAGAAAGAAGCGAGGAGTCAACAGTTACTAGAGGTGGGTGCTTGTGTGAGTTCGGGGTGTCCATAG
Protein Sequence
MLQFQFDFGLAYWGRDGAAGGAAAQAQAQAQAQAALFGFGSRYPPPTTLGVAANQAASLGLHPAASAAWWSMASHLAAQDYLARLQASGLNFPPLGDPYAALSALSGAGMKQPSKPAKQSNRSESLYSRSGRSSTSSSMSTKDKSPATSTSSSQPNMADWGASYGFPKTSSPSTMPSQSMSSLASLNNLAQQPLHSKPNKPQHPPSSRKSGSSKDKELMLAHAHSAYHAALAAHKGKNMSPLYPFGVGGDKDRRGGIDSLTGLPHTILSDPSSVLGGVRLPPDTEIIKYTSSLAGPKAQPGSTTRGRKKTISLDPPHVSVHPAERASKRQKVDEYGNSRSSVEVIRLPNKPERSGANSVSGTPPPNLSDYAGISRELLQTIASQSGVSLAALERQLAGSAPASGCVCYSIPIKVLEGSKYFKALLPDSGLNLSTKSGGSEDAPLDLGLKTDDDAPLNLSLKPTPPSSQASDALSRLTSLSSSLSASNDRISRRKPGAKPRRVAPEINAHVADSPRPKSSGSEDSESVPAWPAREGRPRNLGRGVSKPKKNTVASLLAQSRALGLRPALAQHLLAETDLDKLRALLCEGGSTDSECPSDSNPSDSDASDGGRRHDATLRLPLALGWKRTTVIKGLSRNCNIKGEVSYSAPEPHHHVVVKSAHELQAFLDANPSPPLSRDNFSFSARTLLGDYLQPADGAEPLVLGEAEIIKRLEEARALAALSGRPTPPPLERRMELARRQQAARDARRDHGQRGRDQARLVRELERSEKAELVKREKEARSQQLLEVGACVSSGCP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00781046;
90% Identity
iTF_01080738;
80% Identity
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