Vcar017259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vanessa cardui
Gene Symbol
PAXBP1
Assembly
GCA_905220365.1
Location
LR999926.1:13235076-13252201[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.8e-16 5e-12 46.5 0.8 9 190 513 671 505 680 0.71

Sequence Information

Coding Sequence
ATGTCACTGTTTCGTAAACCGAAGAAGATTCAGAGGCGTGTGTTTTGTGCGGACGATGACGAGGACGGTGAGCCTGAACCGCCGCCGCCGCCAATTATTAGTAATCAAGCTAAAAAGGAAAAGTCTGCTAAAAACACTCCGCTTTTAAGTTTCGCAGACGAAGAAGAAGAAGATGGTGAAGTATTCAAAGTGAAGAAATCTTCACAAAGCAAAAGATTAGCGAAACGCAGAGAGAAAGAGAAGAAACGTGTTCCCGATGGTGATAATGATAAATATGACAATCATGAAGATGAGGAAAAACAACCAGAGGAGAAAGAAAAAACGAAGCCCAAAAAGAAGGTCACACTCGAGGGCCTGATTCTGTCCGGACGAGAGGCCCTGGCGGCGGACGGGGCGGGGGACGTGTCCGATGAGAGCGCCAACGAAGACGAAGAGGATAGTAGGGGTTTCCACCGGTACCGGGCAGAGACCGTGCGGGCGGCGCTGGCCGTGGCCCCCGGACACATTCCCGACGCGGCGCTCATCCACGCGGCGCGCAAGACGCGACAGCAGGCTCGTGAGCTTGGCGACTTCGTGCCTATACAGTCAGAACCGACGACCGGTTCGAGACTCGTTCGAGACGACGACGGCGACGATGATGATGACGAAGACGGCAGGATACAAGTCCGAGGGCTGGAACTGCCGAGTGATAAACCTAAACGTGGTACTGCTGCAGCGCTTTCTGATGAAGAAATAAACAGTGAAGCCGAAGAATGGGAAGAACAACAGATGCAGAAGGCTGTGCCTTCTATTGCAGATATTACAGGTGAGGGCGTGGAGTTGAACCCGTTCGCCGTGGCGCCGCCGCCGCCCCGGCTGGGAGACGCGCCCGCGCACCTGCGCCCGCTCAGCGCGCCCGGCGAGCCGCCGCCCGCCAGCTCGCAGGAGCTGCTGAATGCCCTGCAGGCCAGGCTGGCGGAGCTGCAGAGGGCGCGCGCGGCGACGGCGGCGCTGCGCGCGGCTGTGGAGGAGCGGCTGCTGGGCGCCACGCGCATGCGCGACTCGCGGGCCGCGCGCCGCGCCACGCTGGACGCCGCCTACCGCCGCGCGCAGGCCGCCCGCGGCTACGTCACCGACCTCGTCGAGTGCCTGGACGAGAAGATGCCTCAACTGGAGGCATTGGAGGCTCGGGCGCTGGCGCTGCACAGGCGTCGCTGCGAATTCCTGGTCGAGCGGAGACGTGCCGACGTGCGCGATCAGGCTCAGGACGTGCTCGCTCTTGCTGCGCGCGCCGGCGCGGCCAAGCCGGCCGACGGCGAGGACAAGCGCCAGCGCACGGCGGAGCGCGAGGGCCGGCGCCGCGCGCGCCGCCTGCGCCGCGAGGCCGCCGGCACCGCGCACGCGCACCGCGACGGAGACTCCAGCGACGACGAGCTGCCGCCCGCGCTGTACCACCACTGCCAGCAGGAGACCGAGGCGATCCGCTCGCTGTCGGCGCGTCTGTTCGCGGACGCGCTGAGCGCGTGGCGCGACGTGCGCGGCGTGTGCGCGCGCGCGGCGCGGCTGCGGCGCCGCCAGCCCGCGCTGTACGCGGACGCCTACGTGGCGCACTGCCTGCCGCGGCTGCTGGCGCCCTACGTCAGACATCAGTTAATATTATGGAATCCACTAGCCGATGAAGACAATGAAGACTACGAGAAAATGGACTGGTACAAATGCCTGATGTTGTACGGCGTCAAATCAGAGAATCTATCGAGTGATTCCGATCAATCGTCAGACGATGAAACCGAGCCGCCAACGATCACCGAGGACTCTGTAAGGGAAGACCCTGACCTTATGCTGGTACCTACTATCATCGATAAGGTTGTGCTCCCAAAAGTTACCGAGCTAGTGGAGCAGGCGTGGGACCCGCTGAGCGTGCGCGCGTGCGTGCGCCTGCGCCGCCTGCTGCTGCGCGCCGCGTCGCTGCCGTCCGCCAACCCGCGCCGCCTGGCCGTCGCCGCGCGCGCACGTCTGGCCGCAGCACTCGCCGCTGACGTCTTCCTGCCCGCTCTGCCGCCGCAGATCATGGAGGGTGCGGGCGGTGCATTTTGGAAGCGCAGTCTTGGAGGCGGCGTGAGGTTGCTGCGCGCCGTGCTGGCGCTGTGTGCGCCGCCCGCCGCGCTGCAGGCAGACCCGCTCGCACTCTCGCTCATTGAAACACTGTGCTGTGCGGCGGGTGCAGCGCCGGGCCCGCAAGTGGCCGCCGCCGCCGCCGCACTCGCCGACACGCTGCCCCGCAGCGGCGACCTGCGAGCGAAGGCGCTGCGCCGCCTCGCCGCGCTGGCGCAGCTGGCGCTGAGCCGCCTGCACTCCGACAACCCGATGCATTTAAAAGCGCTCGAGCAAGCAAGAGGTGTTTTAGCCGAGGCGCGAGCGGTAGAATGA
Protein Sequence
MSLFRKPKKIQRRVFCADDDEDGEPEPPPPPIISNQAKKEKSAKNTPLLSFADEEEEDGEVFKVKKSSQSKRLAKRREKEKKRVPDGDNDKYDNHEDEEKQPEEKEKTKPKKKVTLEGLILSGREALAADGAGDVSDESANEDEEDSRGFHRYRAETVRAALAVAPGHIPDAALIHAARKTRQQARELGDFVPIQSEPTTGSRLVRDDDGDDDDDEDGRIQVRGLELPSDKPKRGTAAALSDEEINSEAEEWEEQQMQKAVPSIADITGEGVELNPFAVAPPPPRLGDAPAHLRPLSAPGEPPPASSQELLNALQARLAELQRARAATAALRAAVEERLLGATRMRDSRAARRATLDAAYRRAQAARGYVTDLVECLDEKMPQLEALEARALALHRRRCEFLVERRRADVRDQAQDVLALAARAGAAKPADGEDKRQRTAEREGRRRARRLRREAAGTAHAHRDGDSSDDELPPALYHHCQQETEAIRSLSARLFADALSAWRDVRGVCARAARLRRRQPALYADAYVAHCLPRLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCLMLYGVKSENLSSDSDQSSDDETEPPTITEDSVREDPDLMLVPTIIDKVVLPKVTELVEQAWDPLSVRACVRLRRLLLRAASLPSANPRRLAVAARARLAAALAADVFLPALPPQIMEGAGGAFWKRSLGGGVRLLRAVLALCAPPAALQADPLALSLIETLCCAAGAAPGPQVAAAAAALADTLPRSGDLRAKALRRLAALAQLALSRLHSDNPMHLKALEQARGVLAEARAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01080731;
90% Identity
iTF_01508079;
80% Identity
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