Vcar020325.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999932.1:8888885-8890819[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-07 9.7e-05 22.5 0.0 3 41 16 54 14 56 0.94
Sequence Information
- Coding Sequence
- ATGACCGACACTAAAGCTAAAATTAAATATTACAATTGGAATAAGGAGGACCTAGAAAGGGCTATTGCAGCTTACGAAAACAAAGAATCAAGTTTCAACCAAATTTCAAAGACTTATTCTTTACCAAAACCTACAATTCTACGGCATGTAAAAAAGAAGAATAAGATTGCTATTGATAGAAAAATCCAAAAAGGGAGACCGGTTATCTTCGATGTCGAAACTGAAAATAAGTTGGCTGAGCATATTCTTCATCTCGAAACACACATGTTTGGTCTCACAATAAACGATATTCGACGTCTTGCATTTGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACATCTCTGAACAGAATTAAAGGATTCAATAAAGAAAATGTTTTTCACTTTTTTGATTTGTTAGAGAAGATTATAGATGAAAATGGTATAGAACCTACCAATATCTTCAATGTAGACGAAAGTGGATTTTCAACCGTTCAAAAGAAAGCTCAAAAAATTGTAGGGTTAAAGGGAAAGAAGCAAATTGGCGCTGCTACTAGTGGAGAACGAGGTGTCAATACCACGGCCGTATGCTGCGCTAGTGGATCTGGCCAATTTATCCCTCCAATGCTAATATTTAAAAGGATGAGACAAAACCCGGAACTAGCAAATGGTGCTCCGTTAGGAAGCGTTGTTACTGTTTCTGAAAGCGGTTACATTAACTCTGCGCTTTTTGTTGAATGGTTAAAGCACTTTATTAAAATAGTGAAGCCCACACTTGAAAACAAAGTTCTGCTGCTTTTGGATGGACATACGACTCATTCAAAAAATTTTGAAGCTCTGTGTTTAGCTAGAGATAATGGCATAATACTGTTACAACTACCAGGTCACACCACAAATCGAATTCAGCCTCTTGACGTATCATTTTTCAAACCACTGAGTACATATTACATCCAAAGCACAGAAAAATGGCTGAGAACCAATCCTGGGCGACAAGTAACACAGTACCAAGTTGCACAATTATTTGGAGAAGCTTACGAAAGAGCAGCAGTGATTGGCAATATTGTGAATGGATTCAGAGCTAGTGGAATTTGGCCTACAAACAGACATATTTTTCCGGAGCATATGTTTGAGGCTGCTGACAATTTGCTTACCGCTGAAACAGCCAATTCAAGCAACGAAAGCGTATCAATTTTGCAAAATTTAACGGAATTCGAAAAAGAAGATAACATTAAGAAAAGAAAAGAGGTAGAAGGTAATGATGACAAAGAAAAATGCAATCAAGAAAAGGGCAATAACGAAAAGAAAAAACAAGATAAGGAGCTTTTAAATTCACAGCCATCCACGTCTAAAGTTAAAGATATTCAACTAAAAACCACGCCTGCTGATATTAAAAAAACAATAAAAGTTTTATCACCACTACCAAAAAATACAATGAAAAAGAAGAACACTATACAAAAAGCTATTGAAATTACATCAAGCCCATATAAAAATCAACTAGAAGACAAGATAAAGCAGAAGAAAGATAAAGTAAAAAAAGAAAAGGTTTGTAAACCAAAGAAATATAAAGCAGCAAAAAAAGAAAATAAGATAACAGCTATATCCAAGGGTAAATGCAAAAGTTTCAAGAGAAAACGATCCCCTTCTATCACTAGTAGCGATAACTCAGAAGAAACACTTGTTATGGAATTAGATGACGATGATGAAAGCGATGAAGATCTTGAAAATGTATGTGGAAAGTGCAATCGTTCCTACTACGATAAAAAAGGTCCAAAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCAATCCAGATATTTGCGATGATTGTTTCCAATAA
- Protein Sequence
- MTDTKAKIKYYNWNKEDLERAIAAYENKESSFNQISKTYSLPKPTILRHVKKKNKIAIDRKIQKGRPVIFDVETENKLAEHILHLETHMFGLTINDIRRLAFEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLNRIKGFNKENVFHFFDLLEKIIDENGIEPTNIFNVDESGFSTVQKKAQKIVGLKGKKQIGAATSGERGVNTTAVCCASGSGQFIPPMLIFKRMRQNPELANGAPLGSVVTVSESGYINSALFVEWLKHFIKIVKPTLENKVLLLLDGHTTHSKNFEALCLARDNGIILLQLPGHTTNRIQPLDVSFFKPLSTYYIQSTEKWLRTNPGRQVTQYQVAQLFGEAYERAAVIGNIVNGFRASGIWPTNRHIFPEHMFEAADNLLTAETANSSNESVSILQNLTEFEKEDNIKKRKEVEGNDDKEKCNQEKGNNEKKKQDKELLNSQPSTSKVKDIQLKTTPADIKKTIKVLSPLPKNTMKKKNTIQKAIEITSSPYKNQLEDKIKQKKDKVKKEKVCKPKKYKAAKKENKITAISKGKCKSFKRKRSPSITSSDNSEETLVMELDDDDESDEDLENVCGKCNRSYYDKKGPKVXXXXXXXXXXXXXXXXXSNPDICDDCFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01507137; iTF_01507145; iTF_00276302; iTF_00034646; iTF_00403715; iTF_01507136;
- 90% Identity
- iTF_01507137;
- 80% Identity
- -