Vcar009278.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- Mblk-1
- Assembly
- GCA_905220365.1
- Location
- LR999948.1:8551672-8559805[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-14 5.7e-12 45.7 0.0 1 39 71 110 71 115 0.93 2 2 2.6e-18 8.6e-16 57.9 0.0 1 43 280 323 280 325 0.95
Sequence Information
- Coding Sequence
- ATGTATGGTTGCAGCAGGCTATCAGAAAGCGACAAGGTAGCAGCCCCCAGTTCGTCCCCCACCGTCACGGAACAGCCCCTGGATCTGAGCGCCAAGTCTACATCCAGCACCAGCGGTACGCCGCCTCCTGACGCCAAGAATCTGGATAACGCCAGATTAAAACGCGCAGTCCTCGAAGGAACCAGTAATAGCACTACGAGACGAGCCTACACGGAAGATGAGTTGCAGTCGGCTCTGCGGGACATCCAGTCCGGCCGGCTGGGCACCCGCCGGGCCGCCGTCGTCTACGGCATCCCGCGCTCCACGCTCCGCAACAAGGTCAACAAGTTCGGGCTCATGTCCGACACCGGCCAGGAGTCCGACCCGGACAGCGAGCCCGACAAACCGGAGTCGCCCCCGTCCGTCATCCTCAAGATACCGACATTCCCGCCCCCCGACGAGAAGAGCCCCTCACCGGCAACGCCCGTCACGACGCCGGTCACGCCCATCACGCCGATCCTACCGCCGCAGCCGCCGCTCAACGCGACCTCGCTCCTCCTGCCACCATCGGTCTACGCAGATGCACCCTCCAGTCAGCATCTCTTTACGTCGCTGAGTGACGTTATAGCGAAGAGCATCAGCCAGAAGTTCCAGCAGCCCCTCGATAGACCGCCGCAGGCCTCCGACCTGCAGTTCATGCGGGCGCCCGACAGGCACGTGTCTGTGATAAAAACTCCACCCGATAACCAGAGGAACTACGCGATGCCGAGCAACTCCAAGGCGACGCCCAACAACAACGGGCAGCCCGCGACCGGCGGCAAGGGCACGAGACCCAAGCGAGGAAAGTACCGCAACTACGACAGAGACAGCTTGGTGGAGGCCGTGAAGGCGGTGCAGCGGGGCGAGATGTCGGTACACCGCGCCGGCTCCTACTACGGCGTGCCGCACTCCACGCTGGAGTACAAGGTGAAGGAGCGACATCTCATGCGGCCCAGAAAGAGGGAGCCGAAGCCGCAGCAGGACGTCAAACCGCAGCCGCCGAAGCCGCCCCCGAAGCCCCCGACGAAACCCTTCACGAACGGGCTCAACGGCCCCGAGAGCGGCGGCTACCCCGCCGGGTACCCGTTCTGGCCGGGCGCCGGGTTCGCGCCGCCGCCGACGCCCGACCTGTACGCGTCGCACATGATGCGGCGCCTGCGCGAGGAGGCCCCGCCGCCGGCCAACGGCTCGTTCCTCGAGGGCATCATCCGCTCGAGCCTGGAGCGGCCCGGCGCGGCGCTGCTGCAGCGGCTGAGCGGCGCGCCCGCGTCGCCGCCGGGCGCGGGCGCGCTGCGGCGGCGCGGCGAGCCCGGCGACGAGCCCGCCGCGCGCCGCCCGCGCCTCGACTCCGACCTGCAGCTGGCGGCCGACATGCGCGAGGCGGTGCAGCGGCTGCGCGCCGACAAGCTGCGGCCGCGCAACGGCACGCCCACGCCGCCGCCCGCGTCGCCGGCGGGGGCGGGCGCGGGGGAGCGCGCCTAG
- Protein Sequence
- MYGCSRLSESDKVAAPSSSPTVTEQPLDLSAKSTSSTSGTPPPDAKNLDNARLKRAVLEGTSNSTTRRAYTEDELQSALRDIQSGRLGTRRAAVVYGIPRSTLRNKVNKFGLMSDTGQESDPDSEPDKPESPPSVILKIPTFPPPDEKSPSPATPVTTPVTPITPILPPQPPLNATSLLLPPSVYADAPSSQHLFTSLSDVIAKSISQKFQQPLDRPPQASDLQFMRAPDRHVSVIKTPPDNQRNYAMPSNSKATPNNNGQPATGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQQDVKPQPPKPPPKPPTKPFTNGLNGPESGGYPAGYPFWPGAGFAPPPTPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALLQRLSGAPASPPGAGALRRRGEPGDEPAARRPRLDSDLQLAADMREAVQRLRADKLRPRNGTPTPPPASPAGAGAGERA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078995;
- 90% Identity
- iTF_00824631;
- 80% Identity
- -