Vcar014221.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- kn
- Assembly
- GCA_905220365.1
- Location
- LR999927.1:5858586-5867944[+]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-131 1.1e-126 424.1 0.0 182 387 23 235 5 238 0.97 2 2 1.4e-10 1.8e-06 27.1 7.3 420 565 244 387 236 397 0.77
Sequence Information
- Coding Sequence
- ATGAAGGAGCGGAAGATACAAATTTGTGAACGCGAGAAACAAATTAATACTATAATAGGGAGTTTACGATTTTTTCTAAAATTCTTCCTGAAATGCAATCAAAATTGTTTGAAAAACGCCGGCAACCCGCGTGATATGAGAAGGTTTCAAGTGGTGATATCAACGCAAGTCATGGTGGACGGTCCACTACTGGCGATATCGGATAACATGTTCGTCCACAACAACAGTAAACACGGGAGACGAGCGAAGCGACTTGATCCGTCTGAAGGTACTGACGCCGCGCCCGAGCCTAATTCGGGGCTATACCCACCGTTGCCTGTAGCAACGCCATGCATCAAAGCAATATCTCCGAGCGAAGGCTGGACGTCAGGGGGTTCTACGGTCATAATAGTAGGGGATAACTTTTTCGATGGTCTCCAAGTCGTGTTCGGAACTATGTTAGTTTGGAGCGAGCTTATAACGTCGCACGCGATTAGAGTGCAAACACCACCACGACACATACCTGGCGTCGTGGAAGTTACTCTTTCGTACAAGAGCAAGCAGTTCTCAGCTCTCAACGAGCCGACAATAGATTACGGCTTCCAGAGACTACAGAAACTTATACCGAGACATCCGGGTGATCCTGAAAAACTGCCCAAGGAAATAATACTGAAGCGAGCGGCAGATTTGGCAGAGGCTTTGTACTCTATGCCCCGTAACAACCAACTGGGACTTGGGGCGCCGCGCTCGCCGCCCGCCAGCATGCCCTTCAACTCCTACACGGGGCAGCTGGCTGTCAGTGTACAGGACACTGCCGCATCGCAGTGGACTGAAGAGGAGTACGCGCGCAGCGGCGGCTCGGTGTCGCCGCGCTACTGCTCGGCCGCGTCCACGCCGCACGCCTACGCGCCGCAGCACTACCCCGCGCCGCCCTCCTCGCTCTTCAACTCCTCCTCGCTGTCTCTAGGACCGTACCATCCGGCGAACATGAACGGACATATATCCTCCGAACACTATAACATGTATAGCGCGAAAGATAGCGAGTATTGCGCTGAAAGAAATGGCGACTGTAAGAATGAATGTCCTGTAAACACTCACGCGAAATGCAGCGACTCGCTCGCCAAAGGGAAGCCTAGGAGTGCGTTCGCAGTCGTCAGAAATAGTCCTCCTCGTAATTTACAACATCAAAATTGGCAACATCTCGCCGTCCAGTGTTAG
- Protein Sequence
- MKERKIQICEREKQINTIIGSLRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVMVDGPLLAISDNMFVHNNSKHGRRAKRLDPSEGTDAAPEPNSGLYPPLPVATPCIKAISPSEGWTSGGSTVIIVGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFSALNEPTIDYGFQRLQKLIPRHPGDPEKLPKEIILKRAADLAEALYSMPRNNQLGLGAPRSPPASMPFNSYTGQLAVSVQDTAASQWTEEEYARSGGSVSPRYCSAASTPHAYAPQHYPAPPSSLFNSSSLSLGPYHPANMNGHISSEHYNMYSAKDSEYCAERNGDCKNECPVNTHAKCSDSLAKGKPRSAFAVVRNSPPRNLQHQNWQHLAVQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984815;
- 90% Identity
- iTF_01078861;
- 80% Identity
- -