Vcar018159.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999940.1:788366-791434[-]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.97 1.3e+04 -3.0 0.0 28 41 29 42 27 51 0.71 2 3 5.3e-05 0.69 10.6 0.0 9 30 67 88 66 93 0.88 3 3 5.3e-05 0.69 10.6 0.0 9 30 204 225 203 230 0.88
Sequence Information
- Coding Sequence
- ATGAGCTCCAGTGATGATTCGTTCCATTCAGCCATGAGTGATATTTCTTTCTGTTCCATAGATAATGATGGTCTAACTTTAGGATCAAAGTACGAGAAGCTTAAGAAAGAGACCTTAAAGCTCAGAAACTACTCTGGAATTGATTTGAATAAGCTTCGGTATGACGCCTCAATTATTGACTGGACCGCTTTATTGAATATGGAGACGGTGGATGAAAAGGTCGAGTGCTTGCGTAGTGAAATTTTAAATTTATTTGATCGACATGCTCCGATACGTGATGTTAAACTTAATCACAGAGGGTGTCCGTGGTTCAATGACGAACTTCGTAGAGCCAGGGTAAAACGAGATCAGGCTTTTCGCAAATACAAAAAAGACCGAACGGAGACGAATTGGACAATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGATCAACTAGCTAATTCTCCTTCTTCATCCAGATCAAAGTACGAGAAGCTTAAGAAAGAGACCTTAAAGCTCAGAAACTACTCTGGAATTGATTTGAATAAGCTTCGGTATGACGCCTCAATTATTGACTGGACCGCTTTATTGAATATGGAGACGGTGGATGAAAAGGTCGAGTGCTTGCGTAGTGAAATTTTAAATTTATTTGATCGACATGCTCCGATACGTGATGTTAAACTTAATCACAGAGGGTGTCCGTGGTTCAATGACGAACTTCGTAGAGCCAGGGTAAAACGAGATCAGGCTTTTCGCAAATACAAAAAAGACCGAACGGAGACGAATTGGACAATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGATCAACTAGCTAATTCTCCTTCTTCATCCAGTACCTATAATTTTTTAAAAACCACTGGAATCGGCAAAACCTCTCATACCGATACCAGCTTCATCAAAAGTACTTGA
- Protein Sequence
- MSSSDDSFHSAMSDISFCSIDNDGLTLGSKYEKLKKETLKLRNYSGIDLNKLRYDASIIDWTALLNMETVDEKVECLRSEILNLFDRHAPIRDVKLNHRGCPWFNDELRRARVKRDQAFRKYKKDRTETNWTIYXXXXXXXXXXXXXXXXXXXFDQLANSPSSSRSKYEKLKKETLKLRNYSGIDLNKLRYDASIIDWTALLNMETVDEKVECLRSEILNLFDRHAPIRDVKLNHRGCPWFNDELRRARVKRDQAFRKYKKDRTETNWTIYXXXXXXXXXXXXXXXXXXXFDQLANSPSSSSTYNFLKTTGIGKTSHTDTSFIKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -