Basic Information

Insect: Vanessa atalanta
Gene Symbol: -
Assembly: GCA_905147765.1
Location: LR990578.1:4158158-4164270[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.032 2.5 9.1 0.0 1 23 240 262 240 262 0.98

2 10 0.08 6.2 7.8 0.1 1 21 289 309 289 310 0.95

3 10 0.0002 0.016 16.0 0.3 3 23 334 354 332 354 0.96

4 10 6.7e-06 0.00052 20.6 0.8 1 23 358 380 358 380 0.97

5 10 0.049 3.8 8.5 0.4 1 23 385 408 385 408 0.94

6 10 0.14 10 7.1 0.4 1 23 414 437 414 437 0.92

7 10 0.00018 0.014 16.1 1.3 1 23 444 467 444 467 0.98

8 10 4.9e-05 0.0038 17.9 3.7 1 23 473 495 473 495 0.98

9 10 1.9e-05 0.0015 19.2 6.4 1 23 501 523 501 523 0.97

10 10 2.7e-06 0.00021 21.9 1.0 1 23 529 551 529 551 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.032	2.5	9.1	0.0	1	23	240	262	240	262	0.98
2	10	0.08	6.2	7.8	0.1	1	21	289	309	289	310	0.95
3	10	0.0002	0.016	16.0	0.3	3	23	334	354	332	354	0.96
4	10	6.7e-06	0.00052	20.6	0.8	1	23	358	380	358	380	0.97
5	10	0.049	3.8	8.5	0.4	1	23	385	408	385	408	0.94
6	10	0.14	10	7.1	0.4	1	23	414	437	414	437	0.92
7	10	0.00018	0.014	16.1	1.3	1	23	444	467	444	467	0.98
8	10	4.9e-05	0.0038	17.9	3.7	1	23	473	495	473	495	0.98
9	10	1.9e-05	0.0015	19.2	6.4	1	23	501	523	501	523	0.97
10	10	2.7e-06	0.00021	21.9	1.0	1	23	529	551	529	551	0.98

Sequence Information

Coding Sequence: ATGAATATTTTAAATATGGACGCCGGGATTATGGTTGAAACTTTGCCGATACTCGGTACTTGTAATTTATGCTTAAGCGAAGGTGTCGTCAAGAGTATGCTTATTAAACAAAATAGTGAAAATAAAAGGGATTCCTACACGGATATGCTATTCAAATGTTTTTCAATAGATATGACAGAATTAGACTTGGATGATACAAAACGTCTTATATGTGACGGTTGTATTAAACAACTTGAATTATCTCTGAAGTTTAAGGACCAAGTTGAAACATCATTAAAGACGTTGGAAGCAACTATTAAATTAAAAAAAGCCAGTCAAGCGCATGAATGTGTTAAGGTTGAACTTCCAACAAACAAAGATGAAATATTACAAGAAGCTCTGAAAAACGTGAACGATGACCTCGCAGCTGTCATCGGATGGTCCAAGGATACCTTCGAATGTGATGACTCTGACGACGACAGACTAGTATTTCAGAGCGTTAAGCAAGAAGATGATACTGACGTCGACGATGACACAGAGTATTATCCAGCAAGTTTAAGTGAATTGATGATCAAGACAGAACCAGACGACTATAGACCGAGACGGACGAGAAAAAGAACTCTGCCAACGGGCAAGAAGAAAGTGTCATACTCCGTCAAGAAGCAGGCGGATTTAAAGGAAACAGAGAAAATGTTAGAGGTCGGACTATTTCCGTTCAAAATGGGAAAAAATCAATCGTACTCCTGCGCTATATGTCCAGAAAAGTCAACGGTTCTCGACGATATTAAAGTCCACATTATGCAACACAATATAACGAACATCCACGTTGCTTTTAAGAAGATGATATCGTCGACGTTACAGAAGTTCTACAAATCGTCCGGTAAATTTCGATGCAAGATATGTAGGAGCGAGATTACCGACTACGAGGCCTTGAAACAGCATATAAACGCCTGCGTGTCCGTCAAGTCCGGCAGAGGTTGGAACAATTTGCCATTCAAACTGGAAAAGGACCAATTGGATTGTCCAATTTGTCAGAAGACATTCCTAAACTTCGTCAGCTTAAACACGCATATGAATGTACACTATCCGAATCACATTTGCGACAGCTGCGGCAAAGCTTTCGCTTCGAAAGCTCGCTTGCGAGGTCACATGCGAACTCACGAAATAGGCGATTTCCCGTGTAGATATTGCGACGCAGTTTTCGACAGGGTGACCAAAAGAGAGAATCACGTGTCGAAAGAGCACAAGTCAGGGATACGGTACGCGTGCAAGAGATGCAACATATCCCTGTCATCGTTCTACGCGAGACAGAAGCATCTAGCCGAAGTCCACAACGAGGAGTTGAAGAGGTACAAATGCAAGGCGTGTACCCAAAGTTACATAACTCCGGGTCATCTCTCCAGTCACGTGCGAAGGGATCATTTGAACGAGAGGAATCACAAGTGCACGAAATGCGACCTCGCTTTCTACACGAGAAACTCTCTGAAAATGCACATGATAAAACACGACGGAGAACGAATTCATTCGTGTAACATCTGCCACAAATCTTACCAGAGGAAGAAGACCTTGAGGGAACACATGCGTATACATAATAATGATAAAAGGTTCATCTGTCCGGTGTGCGGGAGGGCGTTCACGCAGAAGTGCACCCTGAAGGGCCACTTGAAGGTCCATGAAAGGAAACCGGATGTCGATGAACGAGTACCGCAACCCTTACATTCGATATAA
Protein Sequence: MNILNMDAGIMVETLPILGTCNLCLSEGVVKSMLIKQNSENKRDSYTDMLFKCFSIDMTELDLDDTKRLICDGCIKQLELSLKFKDQVETSLKTLEATIKLKKASQAHECVKVELPTNKDEILQEALKNVNDDLAAVIGWSKDTFECDDSDDDRLVFQSVKQEDDTDVDDDTEYYPASLSELMIKTEPDDYRPRRTRKRTLPTGKKKVSYSVKKQADLKETEKMLEVGLFPFKMGKNQSYSCAICPEKSTVLDDIKVHIMQHNITNIHVAFKKMISSTLQKFYKSSGKFRCKICRSEITDYEALKQHINACVSVKSGRGWNNLPFKLEKDQLDCPICQKTFLNFVSLNTHMNVHYPNHICDSCGKAFASKARLRGHMRTHEIGDFPCRYCDAVFDRVTKRENHVSKEHKSGIRYACKRCNISLSSFYARQKHLAEVHNEELKRYKCKACTQSYITPGHLSSHVRRDHLNERNHKCTKCDLAFYTRNSLKMHMIKHDGERIHSCNICHKSYQRKKTLREHMRIHNNDKRFICPVCGRAFTQKCTLKGHLKVHERKPDVDERVPQPLHSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01182104;
90% Identity: iTF_01078450;
80% Identity: -