Pdid014034.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philaethria dido
Gene Symbol
-
Assembly
GCA_033558755.1
Location
JAKGSA010000748.1:49717-54121[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.43 31 5.7 0.0 1 23 225 247 225 247 0.96
2 10 0.43 31 5.7 0.1 2 21 275 294 274 295 0.93
3 10 0.00028 0.02 15.7 0.2 3 23 318 338 316 338 0.96
4 10 7.4e-06 0.00053 20.7 0.8 1 23 342 364 342 364 0.97
5 10 0.054 3.8 8.5 0.4 1 23 369 392 369 392 0.94
6 10 0.15 11 7.1 0.4 1 23 398 421 398 421 0.92
7 10 0.0002 0.014 16.2 1.3 1 23 428 451 428 451 0.98
8 10 4e-05 0.0028 18.4 3.6 1 23 457 479 457 479 0.98
9 10 1.6e-05 0.0011 19.7 6.6 1 23 485 507 485 507 0.98
10 10 1.7e-06 0.00012 22.7 1.0 1 23 513 535 513 535 0.98

Sequence Information

Coding Sequence
atggaaGCAGGGATTATGGTGGAAACATTGCCAATATTGGGTACATGCAGTTTATGTCTGAACGAAGGTGTCGTTAAAAGTAtgattattaaacaaattaatgataataaaaaagaatcttaCACAGATATGCTGTTCAAATGTTTTTCTATAGATATGGCAATATTAGAATTAGATGATACAAAACGTTTgatatgtaataattgtatacaACAGTTAGAAAATTGCTTGAAGTTTAAAGAACAAGTGGAGACCTCATTAAAGGCTTTAGAAGTCACTCTCAggttaaaaaaagCTGACCAAGAATATGAAAGTGTAAAGCTTGAAACTTCACCTGCTAAAAACAgtgtgtcTCTAAAAGAAGTGTTGAATGAAGATATATCATCTGTTATTGGATTTTCTAAAGGATTTCAAGACGATGACTCAGacgACGATAGGATATTATTAGGTGCTGTGAAGGAAGAGGAAGATAGTGACTTTGATGATACTGtaTTAAACGACCTCATCATAAAAAAAGAGCCAGACGACTACAGACCGaggcgaaataaaaaaaataaattaacaacaacaaaaaaaaaggtttcctACTCCGTTAAAAAACAAGCGGACCTGTCAGAAACAGAAAAAATGTTGCAATCCGGCCTTTTTCCATTTAAAATGGGCAAAAATGGTTATTCATGCGCCATTTGCCCAGAAAAGTCCGCCATCTTGGATGACATACAGAGTCACATAATGGAGCACAGTGTTGCCAACATACATGTGgcgtttaaaaaaatgatttcgtCAACTTTACAACGATTTTATAAATCTAGTAATAAATTGAGATGTAAAATATGCAGAAGTGATATATCCGATTATGATGCCCTAAAAagtcatataaataattgtatctcAACCAAAAGTAGCGGTTGGAATAATTTGCCCTTCAAACTCGAAAAAGATCAACTCGACTGCCCGATATGtgaaaaaacgtttttaaatttCGTCTCTTTGAATACCCATATGAATGTACACTATCCAAATCATATTTGCGATAGTTGTGGCAAGGCTTTCGCTTCAAAAGCGAGGCTTAGAGGTCACATGAGGACTCACGAAATCGGGGACTTCCCCTGTAGATACTGCGACGCGGTTTTCGACAGAGTGACCAAAAGAGAGAACCACGTTTCTAAAGAACATAAATCGGGTATTAGGTATGCGTGCAAGAGATGCAACATATCGTTGTCCTCTTTCTACGCGCGGCAAAAACATTTGGCGGAGGTTCATAATGAGGAACTGAAAAGATATAAGTGTAAGGCGTGTACACAGAGTTACATCACTCCGGGGCATTTATCGAGTCACGTGAGACGTGATCATTTGAATGAGAGGAACCATAAGTGTAATAAATGTGATTTGGCGTTTTACACACGAAATTCATTGAAAATGCATATGATAAAGCACGATGGAGAGAGAATACACACTTGTAACATATGCCATAAGTCGTATCAGAGAAAAAAGACACTAAGAGAACATATGCGTATCCATAATAATGATAAACGGTTTGTGTGTCCGGTCTGTGGGCGCGCTTTTACACAAAAGTGCACTTTGAAGGGGCATTTGAAAGTGCATGACAGAAAAGTTGATCCGGATGAACGTGTGCCTCAGCCTTtgcattctatttaa
Protein Sequence
MEAGIMVETLPILGTCSLCLNEGVVKSMIIKQINDNKKESYTDMLFKCFSIDMAILELDDTKRLICNNCIQQLENCLKFKEQVETSLKALEVTLRLKKADQEYESVKLETSPAKNSVSLKEVLNEDISSVIGFSKGFQDDDSDDDRILLGAVKEEEDSDFDDTVLNDLIIKKEPDDYRPRRNKKNKLTTTKKKVSYSVKKQADLSETEKMLQSGLFPFKMGKNGYSCAICPEKSAILDDIQSHIMEHSVANIHVAFKKMISSTLQRFYKSSNKLRCKICRSDISDYDALKSHINNCISTKSSGWNNLPFKLEKDQLDCPICEKTFLNFVSLNTHMNVHYPNHICDSCGKAFASKARLRGHMRTHEIGDFPCRYCDAVFDRVTKRENHVSKEHKSGIRYACKRCNISLSSFYARQKHLAEVHNEELKRYKCKACTQSYITPGHLSSHVRRDHLNERNHKCNKCDLAFYTRNSLKMHMIKHDGERIHTCNICHKSYQRKKTLREHMRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHDRKVDPDERVPQPLHSI