Vata020082.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990578.1:4239978-4244612[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.15 12 6.9 0.7 1 21 64 84 64 85 0.96 2 25 0.0064 0.49 11.3 0.6 2 23 157 178 156 178 0.97 3 25 0.015 1.2 10.1 0.1 1 23 182 204 182 204 0.95 4 25 1.3 1e+02 4.0 0.7 1 15 209 223 209 232 0.78 5 25 0.01 0.79 10.6 0.6 1 23 238 261 238 261 0.97 6 25 0.0018 0.14 13.0 1.2 1 23 268 291 268 291 0.98 7 25 0.0003 0.024 15.4 0.7 1 23 298 320 298 320 0.97 8 25 0.0016 0.12 13.1 0.4 1 23 394 417 394 417 0.95 9 25 2.7 2.1e+02 3.0 2.9 3 23 445 466 443 466 0.95 10 25 0.065 5.1 8.1 4.7 1 23 488 510 488 510 0.98 11 25 0.00013 0.0099 16.6 0.5 1 23 514 536 514 536 0.97 12 25 0.0026 0.2 12.5 0.5 1 20 570 589 570 593 0.87 13 25 0.023 1.7 9.5 4.6 1 21 654 674 654 676 0.95 14 25 0.12 9.7 7.2 0.1 3 23 683 704 681 704 0.90 15 25 0.0051 0.39 11.6 4.4 1 23 710 733 710 733 0.96 16 25 0.054 4.2 8.3 2.0 1 23 781 803 781 803 0.94 17 25 0.53 41 5.2 0.0 2 23 827 849 826 849 0.93 18 25 0.0053 0.41 11.5 3.3 3 23 873 893 872 893 0.98 19 25 0.0016 0.12 13.2 3.4 3 23 899 919 898 919 0.97 20 25 0.0019 0.14 12.9 2.3 1 23 926 949 926 949 0.97 21 25 5.7e-05 0.0044 17.7 2.4 1 23 955 978 955 978 0.97 22 25 0.014 1.1 10.2 0.4 1 23 984 1007 984 1007 0.97 23 25 0.00034 0.027 15.3 0.5 1 23 1013 1035 1013 1035 0.97 24 25 7.3e-07 5.6e-05 23.7 1.0 1 23 1041 1063 1041 1063 0.99 25 25 3.9e-05 0.003 18.2 5.3 1 23 1069 1091 1069 1092 0.96
Sequence Information
- Coding Sequence
- ATGAGCAATGAGGCCGCGTTAAAAATTGAGTCGTCTGAAAATTTACTTGTAGAAGATCCTCTAAAAGTTACAGAAAAAAAACGTTATCAAAGAAGCGCAAGAGCCGAAGCGAGGCTTGCTACCAAGAAGAATGCGAGCGCTATTCTCGAATGTTGGACTCTCTGTCCGTTTAGGTGGAAAAGAAATCGATTTAAATGCGCTTACTGTGAGGATAATTTCATTGAATGTACAGAATTGAGAAGTCACATCAGACTATGTTCAACTCAACACTGCGTTAAGGATATATATAGCAAATTCAAGGAAATGTCACTTATAAATATTGACGTGACTGATGCGAGCTGTAGGATATGTGCCATGCCCTTTCAAGGGGTTAACGAAATGCGTAATCACGTTATTGAACACGGTTTTGACTTCGATACGTCTCATCCAGATGGTGTACTACCATTCTTCTTGGACAAAGAGGCGTGGAAATGCTTGATATGTCGAGAATCATTCAATAATTTTCTAAAGCTTTATGAACACATGAATATACACTATCAACACTATATTTGTGCTACATGCGGTAAAGGTTATATGACAGCGCCTCGTTTGCGGAAGCATTCAGAAGTTCATATAAGTGGCACTTTTCCGTGTGACAAATGTAGACAAGTTTTTACCATGCGTGCTGCCCGAGATTATCATAAAGCTCACGCACATGCTAAAGGTCCGCGCTACGAATGTCCACAGTGTAATATGAGATTTGAAGGCTATTATGAAAGAATGAATCATTTAAATAAAGAGCATAGGGAAAAGGAAGTGTTGTATAAATGTGCCCATTGCGAATTATCTTTCAAAACGAGTGGGAAAAGAGCTATCCACGTAAGATCAGTCCACTTTCCTCAGCAGCGAAATTTTGCTTGTCCATTCTGTAAATGGTTATTTAAAACTGGCTACGAATTAAAAAGGCATATGGTCAAACATACTGGTCCCGCTCTTGCGGATTCAGAGGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAAGAAAATGTTTGCGCCAGGCAGAAACGACGACGTCGGCGAGCAAACAACGAATTGCCAGAGGAATCAGAGAAACGAATAGCAAAAACGATGATGCGTCGAAACGCATTGACGCTTCTCGAATGTTCCACAGCTTGGGCCTTTCGTTGGTTCCAAAGCGCGTATTATTGTTCGTATTGTGATGTTAAATTCGTAGATCCTTTACTTTTGCGCGATCACGTTACATCCTTTCATATTGCTGATGCACCAACTAAACGAATATTTTCAAAACTTACCGAAAATAATATGGTTAAGGTAGACGTCTCTAATGTACATTGTAGGATTTGCAATTGCAAGATAGAAAGCATAGATTTTTTGAAAAAGCACCTAATGTCTGTTCATGGAAAAACCCTAAATCCTGATTACAACGATGGCATACTGCCCTTCAAACTCGATTCAAACGGTTTCGAATGCCAAATATGTAGCGCGCATTTTACGAGCTTTTGTAAAATCAATGAACACATGAACACACACTTTAAAAACTATATTTGCGATGCATGCGGTAAGGCGTTCGTATCAAAATCACGATTTAGAACGCATGTTCAATCACACGAGACCGGTAGCTTTCCGTGTGGAGTGTGCGATGAAATTCTAGAAACGAGGGTTGCTAGAATGTGTCATAGGTCGAGAGTTCACAAGAAAGGTTTTCGATACACATGCCCACATTGCCCGGAGGTTTTTACAACTTATTATGCGAGAGGGAAACATTTGGTAGATGGCCATGATCAGCAGAAGCAGAAATACGAATGTTTTACTTGTGGCGATGGAGTCGCAAAGGATATAACAGTAAAAATTGAATGGAAAAAAGTACGAAGAGTTACAGAAGATAAAGCAAACGCTTCCTTGCTTCTCGAATGTTCAAACGCGGTGGCCTTTAGCCACATGAACGAACATTACCAGAGTTTTGTTTGCTATACTTGCGGAAAAGGATACTCTGCCAAGCATAAGTTAAGAGCTCATCAGAAGTGTCACGAAACTGGAAAAATTGCTTGCCCTAAATGTGACCTCGTATTTGTAAATCACGTTGTCAAAAATCGACATGTCGCTGTGATTCACGGTCCGAAAAAGCGGTATCGTTGCCCTGTGTGTGATTTGACTTTCAAATCTTGTCATTCGAGATTGAAACATTTGGACAAAATTCATGGACAAAAAAGAGAATATCGATGGACGATCAAGACTGTAAATTGGAAACGGCGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCCATTATAATCGAATACTCTAATGCCTGTCCATTCCGATGGAAACGTGGTGCTTTCGCTTGTTCGCACTGTCCGAGAACTTTCGGTCATTTTCAAGACGTTCTCAACCATGCTCAGGAACATAGTAATCGTCTTGAAGCGATGAGATACGCGCGGCCGTACGATAATGTAAAAATAGAAATTAGTAATCTTAAATGTGAAATTTGTAACGAAGGTATGAACGGCTTGGAGCAACTCAAAGAGCATTTGCTAAATGTTCACCAAAAGCCAATACATAAGGAGTTGAGCTTGGGCGTGACGCCGTTCATTCTGCAGAATAAAGAAATGCTTTGTACGCATTGTGACGAACGTTTTTCTTTGTTTTCTCGATTGAATAGCCACATGAACCAACATTATCCGAATAATATTTGCTTTCACTGTGGGAAATCTTTCTCAGCCGTCCATCGGTTGAAAGCTCATCAGTTGACTCACGAATCGAACGAAATGGAACATAAATGCTCAAAATGTGACGAAGTATTCGATACTCGAGCGTTAAAAAACTACCACATAAATACAACACACGCTCCAGAAAATCGCTATCGATGCCCGTACTGCAATTTATCATTTAAACGATACTCGGACCGGTTGAGGCATTTGAAACAGCTTCACAATCAAAGCGTCGAATATCCATGTCACTTGTGTGCAGCAGTTTTCGCTATGTCCGACCAAAGAACGAAACACATTAAGAATGTTCATATAAAACACAAGCAATTTCAGTGCGACTTTTGTCCGAGTAAATTCGTGACGGCTGGTCAGTTGAAGAATCATCTTGTGAAGCATTCGGGACTAAGAGAATATCAGTGCAGTGTTTGTAAAAAGAGTTACGCAAGAGCTAGGACGTTAAAGGAACATATGAGGATACACAATAATGATAGACGATTTGTTTGTGAATATTGTAATAATGCCTTCATCCAAAAGTGCAGTCTTAAAAGCCATATGAGAACGCACCATCCAAACGCGGAACCCTCCAAGATTGCAGTTTGA
- Protein Sequence
- MSNEAALKIESSENLLVEDPLKVTEKKRYQRSARAEARLATKKNASAILECWTLCPFRWKRNRFKCAYCEDNFIECTELRSHIRLCSTQHCVKDIYSKFKEMSLINIDVTDASCRICAMPFQGVNEMRNHVIEHGFDFDTSHPDGVLPFFLDKEAWKCLICRESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGTFPCDKCRQVFTMRAARDYHKAHAHAKGPRYECPQCNMRFEGYYERMNHLNKEHREKEVLYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGPALADSEGVKVRRVRKLKENVCARQKRRRRRANNELPEESEKRIAKTMMRRNALTLLECSTAWAFRWFQSAYYCSYCDVKFVDPLLLRDHVTSFHIADAPTKRIFSKLTENNMVKVDVSNVHCRICNCKIESIDFLKKHLMSVHGKTLNPDYNDGILPFKLDSNGFECQICSAHFTSFCKINEHMNTHFKNYICDACGKAFVSKSRFRTHVQSHETGSFPCGVCDEILETRVARMCHRSRVHKKGFRYTCPHCPEVFTTYYARGKHLVDGHDQQKQKYECFTCGDGVAKDITVKIEWKKVRRVTEDKANASLLLECSNAVAFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGKIACPKCDLVFVNHVVKNRHVAVIHGPKKRYRCPVCDLTFKSCHSRLKHLDKIHGQKREYRWTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPRTFGHFQDVLNHAQEHSNRLEAMRYARPYDNVKIEISNLKCEICNEGMNGLEQLKEHLLNVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNEMEHKCSKCDEVFDTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKQLHNQSVEYPCHLCAAVFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCSVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHMRTHHPNAEPSKIAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985355;
- 90% Identity
- -
- 80% Identity
- -