Basic Information

Insect: Vanessa atalanta
Gene Symbol: -
Assembly: GCA_905147765.1
Location: LR990567.1:440551-444685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.36 28 5.8 1.9 1 23 216 238 216 238 0.96

2 19 3.4 2.6e+02 2.7 0.1 2 23 278 300 277 300 0.91

3 19 7.2e-07 5.5e-05 23.7 0.7 2 23 323 344 323 344 0.97

4 19 0.00087 0.067 14.0 2.4 1 23 353 376 353 376 0.93

5 19 0.052 4.1 8.4 0.1 1 23 382 404 382 404 0.93

6 19 2.3e-05 0.0018 19.0 1.3 1 23 410 432 410 432 0.98

7 19 1 77 4.4 3.1 1 23 567 589 567 589 0.95

8 19 1.8e-05 0.0014 19.3 2.8 2 23 596 618 595 618 0.92

9 19 1.6e-06 0.00012 22.6 2.1 1 23 624 646 624 646 0.98

10 19 2.4e-07 1.9e-05 25.2 3.4 1 23 652 674 652 674 0.98

11 19 0.0065 0.5 11.2 4.3 1 23 680 702 680 702 0.96

12 19 1.6e-05 0.0013 19.4 4.3 1 23 708 730 708 730 0.96

13 19 0.02 1.5 9.7 4.7 1 23 736 759 736 759 0.89

14 19 0.12 9.2 7.3 0.1 2 23 858 878 858 878 0.93

15 19 1.4e-05 0.0011 19.7 0.3 1 23 883 906 883 906 0.95

16 19 5.4e-05 0.0042 17.8 0.6 1 23 912 934 912 934 0.92

17 19 3.6e-05 0.0028 18.3 0.3 1 23 940 962 940 962 0.98

18 19 0.00013 0.0098 16.6 0.1 1 23 968 990 968 990 0.95

19 19 0.0017 0.13 13.1 0.1 6 23 1000 1017 999 1017 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.36	28	5.8	1.9	1	23	216	238	216	238	0.96
2	19	3.4	2.6e+02	2.7	0.1	2	23	278	300	277	300	0.91
3	19	7.2e-07	5.5e-05	23.7	0.7	2	23	323	344	323	344	0.97
4	19	0.00087	0.067	14.0	2.4	1	23	353	376	353	376	0.93
5	19	0.052	4.1	8.4	0.1	1	23	382	404	382	404	0.93
6	19	2.3e-05	0.0018	19.0	1.3	1	23	410	432	410	432	0.98
7	19	1	77	4.4	3.1	1	23	567	589	567	589	0.95
8	19	1.8e-05	0.0014	19.3	2.8	2	23	596	618	595	618	0.92
9	19	1.6e-06	0.00012	22.6	2.1	1	23	624	646	624	646	0.98
10	19	2.4e-07	1.9e-05	25.2	3.4	1	23	652	674	652	674	0.98
11	19	0.0065	0.5	11.2	4.3	1	23	680	702	680	702	0.96
12	19	1.6e-05	0.0013	19.4	4.3	1	23	708	730	708	730	0.96
13	19	0.02	1.5	9.7	4.7	1	23	736	759	736	759	0.89
14	19	0.12	9.2	7.3	0.1	2	23	858	878	858	878	0.93
15	19	1.4e-05	0.0011	19.7	0.3	1	23	883	906	883	906	0.95
16	19	5.4e-05	0.0042	17.8	0.6	1	23	912	934	912	934	0.92
17	19	3.6e-05	0.0028	18.3	0.3	1	23	940	962	940	962	0.98
18	19	0.00013	0.0098	16.6	0.1	1	23	968	990	968	990	0.95
19	19	0.0017	0.13	13.1	0.1	6	23	1000	1017	999	1017	0.99

Sequence Information

Coding Sequence: ATGAGTGATTTATCAGACATTTGTCGTATTTGCGGCGCTAATAATCTATCTCTCATCCCATTGTTTGGCCAAGATGCACAGAAAAATGAACTCGTTGAGAAAATAAATAAATATTTACCAATAACGGTGCACCAACAAGACACATATCCTCTGGGAATATGTCAATTGTGTGCTAATACAGTGTTAAACTGGCATGAACTGGCACAATGCTGCATTAAGACTGAAAAAGCGCTGACTTTGAAGCTGAAAGCGAACACACAGACTGTCAAATGCAGTGGACACCATACCAATGTACAAGCAAGTTGTGGTTCAGGGGCTACACGTGGAGAGGCTCATGAGAGGTTATCAGCCCCTTGTTTAATTTTAATAATAAAAGAAGTTCTGAACAATGTATACTTCAAGATAATGAATATGGATGAAGAAAACTCTGATTTAATATATGTCTGCCAAATGTGTCCCGACAAAGCTGCTTCAACATCAATAGACTCTCTTTGTGATCATCTGATAGCAAATCACAACCGAGAACTTAATGATAAGGCATCAGTTGAAGCGTTCATAAAGGAAAACATTACATTCGAAGAAGTTCTGACAAATGATGGCGTAACCGATGATGAGTCAGAGGATCAGGTTGCAGATATACCAAATTATTTTTGCCCTTTTTGCGAAAGTGCATTTTCATCGCCGACCCGCCTCATATGTCACTTGAACAAACACATCGAAGTGAGCATCGACGACGGAGTTCTCTGTTGTGATCATCTGTATGCTGATAAGAAGTCTTTCGTTGCACATTTGCAAGATAAACATGTAAACAGATCAACAGAGGGAACTCTGATTTGCAAAAGTTGTGGTTTAGTCGAGAAAGATCACGACGCCTTGGCCGTTCACGTAAACGAGAAACATGCCGAAGTCAAGGACCCAAAGAAGAAGACGGAACCGAATCTCAAATGCCAGAAGTTCATACCGGCCGTGTGCCCGGAGTGCAACAAATCGTTCTCTAATAAATACAACATGCTTACTCATATGAAAGCTCACACAAGTGAACTCTCTACTAGTAAATTCATGTGCATCAAATGTAACAAAACTTACAAGAGCCGCGGCAGCTTGACGTATCACCAGAGGGTGTTCCACGAAGGGTTGCTTCCGTTTCTATGCTCCATGTGTGGGGAAGCGTTTCCATCGCGTATGGCCAGAGACACACACGCACGCATTCACACGGGGTCGAAGCCGTTCACTTGCGATTACTGTAACAAGTCTTATCGCGCCCAGAACACCTTAAGCCGACATATAGAAATGCATCTGAATATACGGAAATTGACGCCCAGCTGCGACGTTCCGAATATCGTCAGTTTTAGTGAACAGAGAATAAAGGAACACGACTCGCACGAGTCCGGGGGTGGCGCTTCTGATGACGACCGACCTCTCGCAAGCATAGCCAATAGAAATACCAAAATAGATCTTTACCAAAAATTTTATACTGCCCTTGTAAACTTCAGAAATCATTTCACGAAGGAACACGATTGTCACAACTATTCCGACTTCTCAGATTCTAGCACATCCGAAAACGAGGAGACGGGGACGCAGGAGAGTTTAAACAGTTTCGATGACTTGACGCACAGCAACATGAGAAAAGACAAGATGGATGAGGAGACGCGACTCGAACTCAGTCAAGTGCAAACGAAAATAAACGGGAAAGTTTATTTTACGTGCGCGACGTGCGGCAAGAACCTCAGCTCGACCCACACTTACATATTCCACAAACGCATACACACGGGGGAGCGACCGTGCGTGTGTCACATATGCGGGAAGCAGTTCCGCACGCCGAACGGACTTCAGAGACACCTGACCGAAACCCACGAGAAGCAGCGCCGGTACATCTGCGTCATGTGTCACAAAAACTTCGCCAACTCGCAAAACCTCAAACAACACATGAGGATCCACACGGGCGAGCGACCCTTCGTGTGTCCGCACTGCGGCAAGCGCTTCACGCAGAGCGGCTCGCTGCACGTGCACCTGAAAACCCACAGCGAGCACTACCCGCACCACTGCGCGGAGTGCGGCGCCAAGTTCCGCCTGCGCTCCGGCCTCACGAGGCACCGCTTCAAGCACACGGGGGAGCGCCCGCACGCCTGCGCGCACTGCGGGAAGGCCTTCCGCCAGAAGCACGAGCTCAACAGCCACGTGCTCACGCACTCCGACACCAAGCCGCACGCCTGCGCCGTCTGCGGCACCGCCTTCCGCCAGAGGCGAGCTCTGCGCCACCACTGCAAGCGCCTGCACGAGGCCGACGCCAGGGACGTGACGCACACGGTCTACGGCCACGCGGGACACTACGAATCTCGTCATTTCTACCCCCGGCTATCGATTGACTCGCGCACCTCGAACGGGTCATCCGACAAGTCATCCTCGGATCGGAACTACAGGGAGCGTTCATTCGATTTGCTTTTCAGCGCGGTAGGTACCCCGAAACGAGAGCAGGCGCCGGAGCCCGAGGCGGGCCCGACAGAGAACCGGGAGGAGGCGAGCGCGGAGCGGCCCAAGACGATAGTGATCGAGGGCGGGCGGCGCTACGGCGAGTGCGGCGTGTGCGGCAAGCGCGTGCGCACGGCGGGCTGGCGGCGCCACGCGCGCTCGCACGGCGCCAAGCGCCACAGCTGCCACGCGTGCGGCCGCGCCTTCGCCGACGCCGCCAACCTGGCGCGCCACCTGCGCGCGCTGCACCGCCGCCTGCGCCCGCACGCCTGCCCGCTCTGCCCGCGCCGCTTCTCGCGCGCCGGCCACCTGCGCGACCACGTGGACGCGCACTCGGGCCGGCGCGACCACGTGTGCGACGTGTGCGGCAAGGCGTCGGCCTCGCGCGCCGCGCTGCGCATGCACCGGCGCACGCACGACGCGCGGCCGCGCCACGCCTGCGCGCTGTGCGGCGCCGCCTTCAAGCGCCGCGGCCAGCTGCAGGCGCACGTGTCCGTGCACACGGGCCAGCGCGACCACGTGTGCGCGTGCGGGAAGGCCTTCCGCCTGCGCAGCCAGCTCGCCGCGCATGCGCGCCGCCACCTCGCCGCCACCTCGCCGCCACCTGCCGCCGCCAGCTGA
Protein Sequence: MSDLSDICRICGANNLSLIPLFGQDAQKNELVEKINKYLPITVHQQDTYPLGICQLCANTVLNWHELAQCCIKTEKALTLKLKANTQTVKCSGHHTNVQASCGSGATRGEAHERLSAPCLILIIKEVLNNVYFKIMNMDEENSDLIYVCQMCPDKAASTSIDSLCDHLIANHNRELNDKASVEAFIKENITFEEVLTNDGVTDDESEDQVADIPNYFCPFCESAFSSPTRLICHLNKHIEVSIDDGVLCCDHLYADKKSFVAHLQDKHVNRSTEGTLICKSCGLVEKDHDALAVHVNEKHAEVKDPKKKTEPNLKCQKFIPAVCPECNKSFSNKYNMLTHMKAHTSELSTSKFMCIKCNKTYKSRGSLTYHQRVFHEGLLPFLCSMCGEAFPSRMARDTHARIHTGSKPFTCDYCNKSYRAQNTLSRHIEMHLNIRKLTPSCDVPNIVSFSEQRIKEHDSHESGGGASDDDRPLASIANRNTKIDLYQKFYTALVNFRNHFTKEHDCHNYSDFSDSSTSENEETGTQESLNSFDDLTHSNMRKDKMDEETRLELSQVQTKINGKVYFTCATCGKNLSSTHTYIFHKRIHTGERPCVCHICGKQFRTPNGLQRHLTETHEKQRRYICVMCHKNFANSQNLKQHMRIHTGERPFVCPHCGKRFTQSGSLHVHLKTHSEHYPHHCAECGAKFRLRSGLTRHRFKHTGERPHACAHCGKAFRQKHELNSHVLTHSDTKPHACAVCGTAFRQRRALRHHCKRLHEADARDVTHTVYGHAGHYESRHFYPRLSIDSRTSNGSSDKSSSDRNYRERSFDLLFSAVGTPKREQAPEPEAGPTENREEASAERPKTIVIEGGRRYGECGVCGKRVRTAGWRRHARSHGAKRHSCHACGRAFADAANLARHLRALHRRLRPHACPLCPRRFSRAGHLRDHVDAHSGRRDHVCDVCGKASASRAALRMHRRTHDARPRHACALCGAAFKRRGQLQAHVSVHTGQRDHVCACGKAFRLRSQLAAHARRHLAATSPPPAAAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01508245;
90% Identity: iTF_01508245;
80% Identity: -