Vata004643.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- Hr39
- Assembly
- GCA_905147765.1
- Location
- LR990551.1:11835628-11843258[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.097 1.1e+03 -1.0 2.1 62 160 111 212 50 251 0.51 2 4 2 2.2e+04 -6.3 9.3 77 160 206 309 144 334 0.45 3 4 2.8e-08 0.00032 20.6 0.1 1 21 444 464 444 477 0.91 4 4 4e-65 4.5e-61 207.8 0.0 156 408 501 762 473 762 0.83
Sequence Information
- Coding Sequence
- ATGAATACCGCGATGTCGAGCGAGGAGGCGGTGAAGGTGGAGGGGGGACATGTCTCCGTCACAACCATCAGCATGTCTGGTCCGGAAACTAGCAACGGTCAGTTCTCCTACAGCTCGAGTGGAGTACGCATTAGCGTGTCTTCGGAACCTCATGATGAGGATTCTACTGATGCTGAAATCTCCAAAATCGATTTCACGCAACATCAATATGAGGTGAACATGAGAAACAAAAAGAAGCGTTCGTCAAGTGGACAGTGTGAACAGAACGCAGAACAAGAACGTCCTATGTCTTGGGAAGGGGAACTCTCCGACTCTGAAATGGTTATCGACACCAGTGTCAACAATGATGAAAACAGCAGCTCCCTCGACTTACAATCCTCACGGGACTCCATCGACACTCTTCGAAACGTAACCATCAAGACTGAGATACTCAGAGAAGATCCTCTCAAATTAGAAGCCTTTCAGAGTTTGGACGATCAACGTGTTTTGGACCTTAAATACACAGTTCCCTTGCAATCGCACCAGCGGAGTCTCAGCATGAACAGGATATCAGTACTAACGGACAATGCGACACTATCCCTCGCGAGACGACCGTCGTCGCCCACAAGCAGTGCTAAATCGACAATGTCTGACCAGTACGATACACAGCTCATGCAAAATCCCGTCGTAGAAGTCCAGAACTTGACGATCAAGAAAGAAACACAATTATCTGAACTAAAATGCGAACCATCAGTGGGTATGGACAAGTTACTAGGTCTCCACGGATCCCCGTTGCTAGGGAGGCTGCCTCGGGTCCAATCAAGTGCCAGTACGGATTCCGCCGTACATTCTATGTACACGCATAGTGTATACAGTAGTCCTTCAGCTAGTCCTCGTCCCTCTCGTCACTATACGCCATCTCTTTCTCGCAACAACAGTGATGCATCACACTCATCGTGCTACTCATATAGTTCTGAGTTCTCACCTACTCATTCGCCAGTTCAGGGCCGACATCCTCACGTTGTATACCGCGAGGCTACTGTCTTCCCCGCTTCACCTGCCCATGACGAAGATACGGATACGACTGATGAACGCCTTCATCATCACCAGGGTATTAGCAGACAACAATTGATTAATAGTCCATGTCCAATCTGCGGTGATAAGATAAGCGGTTTCCATTACGGAATATTCTCTTGTGAGTCTTGCAAGGGATTCTTCAAACGGACTGTACAAAACCGGAAGAACTACATGTGTCTTCGCGGCGGTAACTGCCCCGTAACTGTCGCTACAAGAAAAAAGTGTCCAGCCTGCAGATTCGACAAGTGTTTGGGATGTGGAATGAAGCTTGAAGCGATCAGAGAAGACAGGACCCGCGGGGGCCGCTCCACGTACCAGTGCTCGTACACGCTGTCGGGCGCGGCGTCGACGGGCTCGCTGCTGTCCGCGCACGCGCCCACCACGCTGCGACACGCCTCCAGTCTCACTTGCGTAAATGGCCCAGGATCGTACACCAGTCGAGGAGAATCAAGCAACAGCCGACTCACGCCTGACATACCGCCATTATTACAAGAAATAATGGACGTGGAACATTTGTGGCAATACAACGAGTCGGAGCTCAGTAGGATGAGCAAGTCGACGGGCAGTCCGTCCGCCAACCCGCTCCTCGCAGCCAGCGGGATCACGGCGCAGAACTCCAGCGCAGACTTCCTCGCCGATCTGTGCAACATCGCGGACCACAGGCTCTACAAGATCGTCAAGTGGTGCAAGAGTTTACCGCTTTTTAAAAATATTTCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTGAGCACGCCGGGCGAGGTGCGCGTGGGCGGCGGCCGCGGGATCACGCTGCACCAGAGCGCCAAATATGGTTTGACACCATGCATTGAACGAATGCTGAGTTTTACGGATCACTTGAGAAGGTTACGAGTGGACCGATATGAATACGTCGCGCTCAAAGTTATTGTACTACTCACATCAGACGCACCGGAATTGCGTGAAGCGGAAAAAGTGCGAGCGTCCCAAGAAAAAGCGCTCGCAGCGCTGCAAGCGTACACAGCGACGCATTCGCCCGATACGCCCGCTAAGTTTGGCGAATTGCTTCTTCGTATACCCGAGTTACAACGAACTTGCCAGTTTTTCATGCAAGTCGGAAAGGAAATGCTTAACCCGGCTAATAAGGGCAAGGACGGCGAAGGTCCGAGCTTCAATCTTCTCATGGAACTTTTGAGAGGCGACCATTGA
- Protein Sequence
- MNTAMSSEEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSEPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGQCEQNAEQERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEILREDPLKLEAFQSLDDQRVLDLKYTVPLQSHQRSLSMNRISVLTDNATLSLARRPSSPTSSAKSTMSDQYDTQLMQNPVVEVQNLTIKKETQLSELKCEPSVGMDKLLGLHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPSRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREATVFPASPAHDEDTDTTDERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAASTGSLLSAHAPTTLRHASSLTCVNGPGSYTSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELSRMSKSTGSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKGKDGEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985246;
- 90% Identity
- iTF_01018623;
- 80% Identity
- iTF_01508161;