Vata005739.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990566.1:8673217-8674161[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-08 0.00013 21.7 5.3 80 174 51 150 7 177 0.80
Sequence Information
- Coding Sequence
- ATGAATATACAGTCAAGCAACACAAACACTAACGCTGGTTCTCTTCCAAATCTTCCGTTGCTTACCGATGATGACTCATCAAACCAAGTAACCTTAAGGAAAAGAAAAACCCCTGATTCTTACAACAATATTTTGAATGACTTGAGACAGGACATGGCGGTTTCTTTAGCGAACTATCGTCAAGAGTTGCGTGAATTGTATACGGAATTTCAAAAAAATATGATGTCGTCTTTAGAAAATATGTTAAAAAAGCAAAATGAGACCATACAAATATTGCACGACGAAATAAATACATTAAAATCTGAAGTTTCGGACATAGCAACCAATTGTTCCCAAATAAAAAAGGATACCGAAAACACAAATTTAGACATTAATCGTCTCAAAAAAGATATTAATGCTACAACAGTCTTGGTATCGACATTGGCCGATCAGCTGCGTCTTAAAGAACAAGAAGGAAGAAAAAATAACCTTGAAATCTCTGGTATACCGATGTCACATAATGAGAACCTACACAACATTTTACATAGATTATCATTAAAAGTAGGCTTTACAATGTTGCCGCAGGACATAGACTTTATACACAGAGTAAGACGTTTTCTTCCTCAAGACGTAACCACTGTTACCGAAAAGCAATCTCCATCAATCCCGAATATTATCGTAAGGTTTACTCAGCGCAAACGCAAGAACGAGTTGTTGGCGGCAGTGCGCGCCCGTCGTGGTATTACTACAACGGACCTGGATATCGACGGTGCTTCGAAACCTATATTTGTGAACGACCACCTTTCTCCCCAAAACAAATTATTATATAGCCGTGCACGGCGTCTGGGCAAGGAGCTGAGATTCAGATACATCTGGCTGAATGACTGTAAAATATTCCTAAGAAAGAATGACAACTCTAAAGTAATCTTTATTGCGAATGAAAGTGATTTAAGTAAAATAAAGTGA
- Protein Sequence
- MNIQSSNTNTNAGSLPNLPLLTDDDSSNQVTLRKRKTPDSYNNILNDLRQDMAVSLANYRQELRELYTEFQKNMMSSLENMLKKQNETIQILHDEINTLKSEVSDIATNCSQIKKDTENTNLDINRLKKDINATTVLVSTLADQLRLKEQEGRKNNLEISGIPMSHNENLHNILHRLSLKVGFTMLPQDIDFIHRVRRFLPQDVTTVTEKQSPSIPNIIVRFTQRKRKNELLAAVRARRGITTTDLDIDGASKPIFVNDHLSPQNKLLYSRARRLGKELRFRYIWLNDCKIFLRKNDNSKVIFIANESDLSKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01507235; iTF_01507236; iTF_01506358; iTF_01506359;
- 90% Identity
- iTF_01507235; iTF_01507236; iTF_01506358; iTF_01506359;
- 80% Identity
- -