Vata014380.1
Basic Information
- Insect
- Vanessa atalanta
- Gene Symbol
- -
- Assembly
- GCA_905147765.1
- Location
- LR990565.1:7847181-7849070[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-11 1.6e-08 34.4 0.1 4 40 23 59 20 64 0.88
Sequence Information
- Coding Sequence
- ATGAATCAGCAAGTCGATGAATCAGCATCTAAACCAAAGCAACAACGTGCGAAATGGTCCGAGCACCAGATTACTTGTGCTGTGAGGGCTGTACAACGAAATATACTTTCCCAAAGAGAAGCTGCTAAAAGATATAACATTCCACGAAGAACATTAAGGAACCACTTAAAAACTGGCTCGATGGAAAGGAAATTAGGTCGAGCGGCCACCTTAACACCAGAACAAGAAGAAGATTTAGTGGGTAGAATAATACGCTTGGCTGAAGTGGGAATGCCTCTAACACCTAAACTTGTTCGAAAGCAAGCATTTGTTTTTTGTAAAAAAAACAGCATACCTAATCGCTTCAGTGATACTACTTCTACAGCTGGCAGAAAATGGCTGAAACTGTTTCTAAAAAGGCATCCTCAACTAACTCGGCGAAAAGCCCAAATGATGAACCCATCAAGGGCCCAAAAGCTAAATAAATTTATTGTCAGTGATCATTTTGATAAAGTAAAAAGCTTACGAGAGAAACTTCATATTGAAAATAGACCGGAATGCCTATACAACATGGATGAAAAGAGTTGCCGTATATCACTTCATCATCAGCAAACCGTGTTAGCCCAAAAAGGGATAAAAAGACTGCATCAAATAGCTAACGAACATGCAGAAAGCGTTACAGTAGTCGGCTGTGTAAATGCTGTAGGAAATGCTATTCCACCGATGATTTTGTTTAGAGGCAAAAGAATGAAACCTGAATTTACTGATAATTTACCAGCAGGTTCATTGGTTAAAATGACTGCAAAGGGATACATGACACATGAAACTTTTATTGATTTCATTGAACATTTGGCTAAACACAAAACTTCTGGAAAATGTCTTCTGGTGTTTGATGGAGCGGCGTGCCATCTCGATTACAGCATAGTAGAAGAAGCTGTAAAACATGATATAGCACTGTATTGCCTTCCGTCAAATACGACACACGAACTCCAACCCTTGGATAAATCGGTATATCGTTCATTTGAGCACCACTGGGACCAAGAACTGTTAAAATTCGTTTCAAAAAATCCAGATAGAAAATTAAATAAATCAAGTTTCAACATGATTTTGTCGGAAGTCTGGCCAAAATGCAAGACACATGATAATATCGTAAATGGATTCAAAGCTACCGGTCTTTATCCATTTGACCCCGAAGTTATACCTGAAGAGGCGTTTGCCCCATCTGCATTAACAGAACTATCTATTCCAGCAAGCAGTGAGAACGTTATAGCGTCCACCAGTCACGGTATTGTACAGAACACAAATATTACCCAGATGACTGGTTTAAATGTCAACACAGGCTCTGAATCTGATTCAGACTCCGATAATATCCCATTATCTGTATTAAGAACCTGTGCGGTTTCTACTACCCCAAGCCAACTAAGTACGGAAGTTTTCGATATCAATGACGAAAACCGCAACCCAGAGCAGCCGTCTTATGAAGAAACTCCTGCTGTTGATCCCTCAGTAAAACATGACAGCAATACAGTCGCGGCCAAGTCACCCTTTCAAACACTCATTCCAACGCCAAAGATCCTTAAGATTAACACAGCTGCTCCACGAAAGAAAGCATTAAATTATAGAGGACAACAAGTAACAAAAGATCTATTTGCAACAAGAAAGGTAAGTACATCTTCTACTAGGCCAAAAGGAAGACCAAAGCCCTCCAAAGATAGAGGTCAGAAATCTGGAGTGACTAGAAAGAATCAGCAGTCATTAGCTGGGACTTGGTTTTGTCATGCTTGCAAAGAAGATAAGATTTTGGACATGAGGCAATGTAAACTATGTGGTGCATGGTTCCACGAGATATGTGTGGGCCTTGATGCCGATGATGAGGATTTCGAATGCCCTGTGGCATGCATTACAAACTAA
- Protein Sequence
- MNQQVDESASKPKQQRAKWSEHQITCAVRAVQRNILSQREAAKRYNIPRRTLRNHLKTGSMERKLGRAATLTPEQEEDLVGRIIRLAEVGMPLTPKLVRKQAFVFCKKNSIPNRFSDTTSTAGRKWLKLFLKRHPQLTRRKAQMMNPSRAQKLNKFIVSDHFDKVKSLREKLHIENRPECLYNMDEKSCRISLHHQQTVLAQKGIKRLHQIANEHAESVTVVGCVNAVGNAIPPMILFRGKRMKPEFTDNLPAGSLVKMTAKGYMTHETFIDFIEHLAKHKTSGKCLLVFDGAACHLDYSIVEEAVKHDIALYCLPSNTTHELQPLDKSVYRSFEHHWDQELLKFVSKNPDRKLNKSSFNMILSEVWPKCKTHDNIVNGFKATGLYPFDPEVIPEEAFAPSALTELSIPASSENVIASTSHGIVQNTNITQMTGLNVNTGSESDSDSDNIPLSVLRTCAVSTTPSQLSTEVFDINDENRNPEQPSYEETPAVDPSVKHDSNTVAAKSPFQTLIPTPKILKINTAAPRKKALNYRGQQVTKDLFATRKVSTSSTRPKGRPKPSKDRGQKSGVTRKNQQSLAGTWFCHACKEDKILDMRQCKLCGAWFHEICVGLDADDEDFECPVACITN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00779447; iTF_00777947; iTF_00656056; iTF_00656057; iTF_00656058; iTF_01507104;
- 90% Identity
- -
- 80% Identity
- -