Basic Information

Insect: Urophora cardui
Gene Symbol: verF
Assembly: GCA_960531455.1
Location: OY482671.1:107733035-107736416[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.5e-05 0.006 18.3 4.4 1 23 268 290 268 290 0.99

2 9 0.0047 0.62 12.0 2.6 1 23 296 319 296 319 0.96

3 9 0.00011 0.014 17.1 1.1 1 23 326 351 326 351 0.97

4 9 0.00084 0.11 14.3 0.6 2 23 362 383 361 383 0.96

5 9 6.7e-05 0.0089 17.8 1.5 1 23 391 413 391 413 0.98

6 9 0.0021 0.28 13.0 0.8 1 23 419 441 419 441 0.97

7 9 9.8e-05 0.013 17.2 0.1 2 23 448 470 447 470 0.87

8 9 0.00013 0.017 16.9 2.6 1 23 476 498 476 498 0.97

9 9 4.6e-07 6.1e-05 24.6 0.1 3 23 506 526 505 526 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.5e-05	0.006	18.3	4.4	1	23	268	290	268	290	0.99
2	9	0.0047	0.62	12.0	2.6	1	23	296	319	296	319	0.96
3	9	0.00011	0.014	17.1	1.1	1	23	326	351	326	351	0.97
4	9	0.00084	0.11	14.3	0.6	2	23	362	383	361	383	0.96
5	9	6.7e-05	0.0089	17.8	1.5	1	23	391	413	391	413	0.98
6	9	0.0021	0.28	13.0	0.8	1	23	419	441	419	441	0.97
7	9	9.8e-05	0.013	17.2	0.1	2	23	448	470	447	470	0.87
8	9	0.00013	0.017	16.9	2.6	1	23	476	498	476	498	0.97
9	9	4.6e-07	6.1e-05	24.6	0.1	3	23	506	526	505	526	0.99

Sequence Information

Coding Sequence: ATGAAAATTACAGCACAAAATATGCAAAACTTTTGCCGTACATGCCTCGAGAAGCTTACCAGGAGAAAAGTTAGCTTAAGCGAAAATGAGCTGATTGCAGAGCTCATAACTTGGTGTACCACCGCAATGCCAGTGGCGGATGAGCAGAAGATACTTCCAGAATTTATATGTTTAAAATGCCAAACAACGCTCAATATTATCCGAGATTTTCGTTGCAAGGCAGAACAATCGCTTTGTATGTTAACTAATATTATCAGGGAGTTCGAAGACACCAATCCAAAAATAACCGAAAAAAGAATTTGGGACCAATGTTACGAAGATATGAAAGAATTGCAAATGGATAAGGAGAAAGTTATTCAGATGGAAAATTGCTATAAGGCCCATGcaaatGCTGATAAAACTACCGCTGACTCTCAAATAGCCCAATTGGAAAGCAAAAAACACGAATTTGAATATAATGGTGATAAGAGTGAAAGTGAAATGGATTTCTTAGATGTAAATCAAGTCGATATACAAACGGAAAATGAAAATGTAGATCAACTGGAGTTTTTCCAGAATTATAAATTAACCAATTTAGAATCGTCGAAACAAGCGGCGTCCGTACAACACAAAAGAGATGACAATAAGCTTGAAGATGTTCCAAAAAAAGCGGGAAGTGCGAAGAGAAAAAGACGTTTAAAAAAGGTATCGCCCACAAAGACCAAACGCAACCGTACTAAGGATAAGGTTCACGCAGATGGCAATGGTGATGGTGATAAAGAAGGTGAACACGCAGAAACAAGTGGAAGTAATTACTTTAAATATCAATGCGATCAATGTCCACGACGATTTGTATCCCATTTCCATTACCAGGCACATTTGCGTGTCCATCAGGGTCTTAGGCCGTTCGCATGTCCACAATGTGAGAGCACTTTCACACGAGCTGATCATTGCCGTACACACATACGAGAAATTCATGCTAATACGTCACCACAATATAAATGCACCGTGGAGGGATGTGACAAAGAATTTAGGCGTGAAGGCTCATACCGAATGCATTACCGTCTAAAACACAAAAGTGTGACACGCGAACCTAAGCACCTCATGTGTGAAGAGTGCGGTAGTGTATTCAATAATGCCACCAAATTCAAAGCGCATCGCTATAAACACGTACCGGTCGATGAATATCCATACGAATGTGATGAATGTGGCAAACGATATCGCTCCAGACGTTCCGTTAAGGAACATAAACTTCGGCATTCCAAAGTCAAGAATTTCGTTTGTCCGTATTGTGGTATGAAGAAGACGACACGTAATGAATTACGTTCACACGTAAATTATCACACAAAAATTAAGCAATGGCCATGTACAAAATGTGATAAAGTTTTTAATAGTTCTGGAAATTTGCTTATACATGATCGTGTGGTGCATATGGGTATACGGGCCTATGCTTGCAAGTATTGCAAACAGAGCTTTGGCAAACCAGATACTCTGCGACATCACGAAATGCGTCATACGGGCGAAAAGCCACATGGCTGTGAGATTTGTGGCAAACGTTTTATACAATCTGTTGCATTGCGTGCACACATGCGAGTGCATAGCAAAGAGCGTCCCTCCGGACAAGTCTCGAAGAAGTGCTCGGCGCAAAAGCACGAGCTATTCGTTTTAGATGAGGGGGTGAAGGAGGACGTGGAGAAGGAAAACAATGAACTGAGTGAATATAACGAAGCAACATAG
Protein Sequence: MKITAQNMQNFCRTCLEKLTRRKVSLSENELIAELITWCTTAMPVADEQKILPEFICLKCQTTLNIIRDFRCKAEQSLCMLTNIIREFEDTNPKITEKRIWDQCYEDMKELQMDKEKVIQMENCYKAHANADKTTADSQIAQLESKKHEFEYNGDKSESEMDFLDVNQVDIQTENENVDQLEFFQNYKLTNLESSKQAASVQHKRDDNKLEDVPKKAGSAKRKRRLKKVSPTKTKRNRTKDKVHADGNGDGDKEGEHAETSGSNYFKYQCDQCPRRFVSHFHYQAHLRVHQGLRPFACPQCESTFTRADHCRTHIREIHANTSPQYKCTVEGCDKEFRREGSYRMHYRLKHKSVTREPKHLMCEECGSVFNNATKFKAHRYKHVPVDEYPYECDECGKRYRSRRSVKEHKLRHSKVKNFVCPYCGMKKTTRNELRSHVNYHTKIKQWPCTKCDKVFNSSGNLLIHDRVVHMGIRAYACKYCKQSFGKPDTLRHHEMRHTGEKPHGCEICGKRFIQSVALRAHMRVHSKERPSGQVSKKCSAQKHELFVLDEGVKEDVEKENNELSEYNEAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01505716;
90% Identity: -
80% Identity: -