Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482671.1:107740448-107742875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00036 0.048 15.4 5.6 1 23 274 296 274 296 0.98

2 9 0.0005 0.066 15.0 0.7 1 23 302 325 302 325 0.95

3 9 4e-05 0.0053 18.5 0.5 1 23 332 357 332 357 0.98

4 9 0.0013 0.17 13.8 1.0 2 23 368 389 367 389 0.95

5 9 8e-05 0.011 17.5 1.7 1 23 397 419 397 419 0.98

6 9 0.0019 0.25 13.2 0.9 1 23 425 447 425 447 0.97

7 9 2.5e-06 0.00033 22.2 0.3 2 23 454 476 453 476 0.95

8 9 3.1e-05 0.0041 18.8 1.8 1 23 482 504 482 504 0.97

9 9 4.4e-07 5.8e-05 24.6 0.1 3 23 512 532 511 532 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00036	0.048	15.4	5.6	1	23	274	296	274	296	0.98
2	9	0.0005	0.066	15.0	0.7	1	23	302	325	302	325	0.95
3	9	4e-05	0.0053	18.5	0.5	1	23	332	357	332	357	0.98
4	9	0.0013	0.17	13.8	1.0	2	23	368	389	367	389	0.95
5	9	8e-05	0.011	17.5	1.7	1	23	397	419	397	419	0.98
6	9	0.0019	0.25	13.2	0.9	1	23	425	447	425	447	0.97
7	9	2.5e-06	0.00033	22.2	0.3	2	23	454	476	453	476	0.95
8	9	3.1e-05	0.0041	18.8	1.8	1	23	482	504	482	504	0.97
9	9	4.4e-07	5.8e-05	24.6	0.1	3	23	512	532	511	532	0.99

Sequence Information

Coding Sequence: ATGTGCTGTAAAAAGAGTGAAATGAAAATTACAGCACAAAATATGCAAAACTTTTGTCGTACATGCCTCGAGAAGCTAACCAGGAGAAAAGTTAGCTTAAGCGAAAATGAGCTGCTCGCAGAGCTCATAGATTGGTGCACAACCGCAATGCCAGTGGCGGATGAGCAGAAAATACTACCAGAATTTATATGTTTAAAATGTCAAAAGAAGCTCAATGTTATCCGAGATTTTCGTTGCAAGGCAGAACAATCGCTTTGCATGTTAGCTAATATTATCAAGGAGTTCGAAGACACCATTCCAAAAacaactgaaaaagaaattcaaGAGCAATGCTACGTCGAAGATATTAAAGAATTGTTAATGGATGAGGAGCAAGTTATTCAGATTGACAATTGCTTTGAGACCGatGCTATTAAAACTACCGCTGACTCTCCAACAGCTCAATTGGAAATCGATAAACACGAATTCGAATCTTGTGGTGATAAGAGTGAAAATGAAATGGATTTCTTAGATGTAAATCAAGTCGATATACAAACGGAAAATGAAAATGTAGATCAACTGGAGTTTTTCCAGAATTATAAATTAACCAATTTAGAATCGTCGAAACAAGCGGCGTCCGTACAACACAAAAGAGATGACAATAAGCTTGAAGATGTTCCAAAAAAAGCGGGAAGTGCGAAGAGAAAAAGACGTTTAAAAAAGGTATCGCCCACAAAGACCAAACGCAACCGTACTAAGGATAAGGTTCACGCAGATGGCAATGGTGATGGTCATAAAGAAGGTGAACACGCAGACACAAGTGGAAGTAATTACTTTAAATATCAATGCGATCAATGTCCACGACGATTTGTATCCCATTTCCATTACCAGGCACATTTGCGTTTCCATCAGGGTCTTAGGCCGTTCGCATGTCCACAATGCGATAGCACTTTCTTGCGCGCTAGTCATCTCCGTACACACGTACGAGAAATTCATGCTACCACCACACCACAGTTTAAATGCCCCGCGGAGGGATGTGACAAAGTATTTAGGCTTTCAGCCACATACAGAACCCATTACCGTGTGAAACACAAAACTGGGCCATGTAAAACTAAACATCTTATGTGTGAGGAGTGCGGTAGTGTATTCAGTAATACCACCAAATTTAAAGCGCATCGCTATAAACACGCACCTGTCAAAGAATATCCATACGAATGTGATGAATGTGGCAAACGATATCGCACCAGACGTTCCATTAAGGATCATAAACTGCGGCATGCCAAAATCAAGAATTTCGTTTGTCCGTATTGTGGTATGAAGAAGACGACACGTAATGAATTACGTACACACGTAAATTATCACACAAAAAACAAGCAATGGCCATGTACAAAATGTGATAAAGTTTTTAATAGTTCCGGAAATTTGAATACACATAATCGTGTGGTGCATATGGGTATACGGGCGTATGCTTGCAAGTATTGCGATCAGAGCTTTGGCAAACCAGATACTCTGCGACATCACGAAATGCGTCATACGGGTGAAAAGCCACATGGCTGTGAGATTTGTGGAAAACGTTTTATACAATCTGTTGCATTGCGGGCACACATGCGAGTGCATAGCAAAGAGCGTGCTTCCGGACAAGTCTCGAAGAAATCATCGGCAGAAAATCAGTAG
Protein Sequence: MCCKKSEMKITAQNMQNFCRTCLEKLTRRKVSLSENELLAELIDWCTTAMPVADEQKILPEFICLKCQKKLNVIRDFRCKAEQSLCMLANIIKEFEDTIPKTTEKEIQEQCYVEDIKELLMDEEQVIQIDNCFETDAIKTTADSPTAQLEIDKHEFESCGDKSENEMDFLDVNQVDIQTENENVDQLEFFQNYKLTNLESSKQAASVQHKRDDNKLEDVPKKAGSAKRKRRLKKVSPTKTKRNRTKDKVHADGNGDGHKEGEHADTSGSNYFKYQCDQCPRRFVSHFHYQAHLRFHQGLRPFACPQCDSTFLRASHLRTHVREIHATTTPQFKCPAEGCDKVFRLSATYRTHYRVKHKTGPCKTKHLMCEECGSVFSNTTKFKAHRYKHAPVKEYPYECDECGKRYRTRRSIKDHKLRHAKIKNFVCPYCGMKKTTRNELRTHVNYHTKNKQWPCTKCDKVFNSSGNLNTHNRVVHMGIRAYACKYCDQSFGKPDTLRHHEMRHTGEKPHGCEICGKRFIQSVALRAHMRVHSKERASGQVSKKSSAENQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01505724;
90% Identity: -
80% Identity: -