Ucar006496.2
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482670.1:104459136-104461033[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-11 4.9e-08 33.9 0.0 2 35 17 50 16 53 0.94
Sequence Information
- Coding Sequence
- ATGGCCTCTAAATCGACTCAAGATTCCAAAAAACGACAGACGTGGAGCAAGGAGAACATGACTGAGGCAATTTCGGCTGTGAAAACGAAGAAGATGGGGTTCTTGAGGGCATCAAAAGAATACAACGTACCTAAAACCACATTGCGGAGATTATTTGCGGATGATAAACAACCTGTTGATGAAGTAGTGAAGGCTAAGCTTGGTAGGAAACCAGTTTTCCCTCCAGAGCTAGAAAGTTCTCTTGTGGAATATATATTGCTCATGGAGGCGAAATTGTTTGGGTTAACCAGGAGTGACATAAGAGCCCTAGCATTTCAATTGGCGTTAAAAAACAATTTACCTAACCCTTTTTCTATCGCGAAGGAAACAGCAGGAAGAGATTGGTTGCGTTTGTTTCTTAAGCGCCACCCGACAATCTCATTCCGTCAACCGACCAGTACATCTGTAGCTCGAGCAAAAGGATTTTCTAGGGAAAATGTTGCGATTTTCTTTGATCTGCTACAAAAGGAGATGGAAACTTATAAATTCTCCCCTAATAACATTTATAATGTTGATGAAACTGGGATATCAGTTGTGCCTACCAAATTGCCGAAGGTTTTGGCTCTGAAAGGTCGGAAACAGATACGTGCTCTTTCTTCGGCTGAAAGAGGATCTTTAATTACAGCAATTTTATGTATGAATGCAGGTGGATCGTTCGTGCCACCCATGTTCATTTTTCCCCGTAAAAGGGATAATCCACTTCTAATGAAAGGAGCACCGCCTGGAGCCATACATGCTAATCATCCCTCTGGATGGGTTCAAACAAATTTATTCACTAAATGGTTCAAACACTTCCTATCAGTAGTTAAACCTTCTGAATCATCTCCGGTACTACTAATTTTAGATGGACATGCAAGTCATACAAGAAATATTGAAATAATAGAGCTAGCTCGAAAAAATCACGTTCGTATTCTTTCAATTCCTCCGCATTCAAGTCACCAAATTCAGCCCCTTGACAAAACTTTTATGGGGCctctaaaaaaatatttgacagAGGAAATCAGGTGTTGGGTCATAAGTAATGCTAAAGCCTTGACCCAGTATGACATTATCGAATTATTTGGCCGAGCGTACATGAAAGCGCAAAGTGGACAAATTGCTGTCAAAGGGTTTTCTTCAACCGGAATATACCCGTATAATAGTCAAATCTTTAACGACCACGATTTTTTGGCATCCGAAGAAGTTGAAGTACCGGTAGATAGCGTAGAAAACATTAATCAGGCTTCGATATCACCTACACACACTAATAAATTGCCGGAATCAGAAAACAATCCCGATATGGTGGAACCTATTTCTTTCGAGCCGTCTACCTCCTCTGGAGCAAAGTCAGGCTCCTTTATATTGCCTCAAGAGATTTCCCCGATTCCAGTTCGTaccaaaaaaacaacaaaccgCGGAAGGAAAACAGGAAAATCAGAAATAATTTCATCTTCACCATACAAGCAGGCTTTAGAAGAAtctttgaaaaaaataaaggaTGGAAAACATACGAAGAACGGAAAGCCGAAACCCACAAAATGCAGTAGCAAGGGaaatgctttaaaaaataagAAAAAAGATCGTCGTTTGGAAGAAACCTCTTCATCGGAAAGTGACAATTTAATCTTAAATGATTCGCCAGATCTTAGTCCAGATAGATCCAATCAAGAAGATGCGAAATGTATCTACTGTTCATGCTTATTTTCGGATGACAAAGGTGGAGAAGCATGGATGCAGTGTGTGGTATGCGCAATGTGGGCGCATGAACTTTGTTCAGGAAATGAAAAAGAGTATTTCATTTGCGACTTTTGTTGCTCATAA
- Protein Sequence
- MASKSTQDSKKRQTWSKENMTEAISAVKTKKMGFLRASKEYNVPKTTLRRLFADDKQPVDEVVKAKLGRKPVFPPELESSLVEYILLMEAKLFGLTRSDIRALAFQLALKNNLPNPFSIAKETAGRDWLRLFLKRHPTISFRQPTSTSVARAKGFSRENVAIFFDLLQKEMETYKFSPNNIYNVDETGISVVPTKLPKVLALKGRKQIRALSSAERGSLITAILCMNAGGSFVPPMFIFPRKRDNPLLMKGAPPGAIHANHPSGWVQTNLFTKWFKHFLSVVKPSESSPVLLILDGHASHTRNIEIIELARKNHVRILSIPPHSSHQIQPLDKTFMGPLKKYLTEEIRCWVISNAKALTQYDIIELFGRAYMKAQSGQIAVKGFSSTGIYPYNSQIFNDHDFLASEEVEVPVDSVENINQASISPTHTNKLPESENNPDMVEPISFEPSTSSGAKSGSFILPQEISPIPVRTKKTTNRGRKTGKSEIISSSPYKQALEESLKKIKDGKHTKNGKPKPTKCSSKGNALKNKKKDRRLEETSSSESDNLILNDSPDLSPDRSNQEDAKCIYCSCLFSDDKGGEAWMQCVVCAMWAHELCSGNEKEYFICDFCCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00082059;
- 90% Identity
- iTF_01505312;
- 80% Identity
- -