Ucar008799.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482670.1:159857148-159873469[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 1.8e-07 32.1 0.0 1 38 527 565 527 570 0.89 2 4 4e-13 5.5e-10 40.1 0.0 2 39 582 619 581 622 0.94 3 4 4.7e-17 6.5e-14 52.7 0.0 1 45 636 681 636 681 0.98 4 4 1.4e-18 2e-15 57.6 0.0 1 43 688 731 688 733 0.96
Sequence Information
- Coding Sequence
- ATGTTGGATGAATTGAGACCGGAGGCGCAGTCAGACCAGACAAGTCCCGGCgaatcgggATTGTTACGTACTGCCGAACAGCTAAAAATAAAAGGGCTTTGTGAAACGGCAGAAAATACAGATGATTTGAGCGACACAGCTACTGCTACTATTACAGTTTCAGAAAATATTCAACAGGCAGTAGTTGGTAATATTATAAACACAGCCGTGACCCCCGGGCAAAGCTCTCCCGTtactcaacaacaacaacaacaacaacagcagcagcaacagcaacaacatatAACCAATGCAACAGTGCTCACTCATAATATTGGTAGCGTTGCTGCTACAAATACACAGCAAATTGCATCTCCTGGCGCGAATAGCGCTACCCAATTGCTAGCTGCTGGATCATCATCATCTCAGCATTCACAAAGCGGACGCAAGTCTCGCGTTCGTAAACGTTCAAAATCTCCAGAATTGCAGCAACAAGGCAATAACGCTCAACAACAGATCCAACAGCATTCACAAACAATTTtaattcaaaatcaaaatcaggcggGGATCGTTAATTTGCAACAAACATCTTCGGGAAATTACATACCCGTATCAGGAGTACAGACCGTTACCTCTAGTGTAGTGGGACAGCAACAAGCTGTAATAGCCAGTGACGAGTCGGATACAGACAAGCCGGCGCTATCAAAAATCTGTAAGACGGAAACTGCTTCAGCTTCACCTGCATCAAGTACATCTGGCGTATCGACATCAAATAATGCTGGAAGTGTAACAACTGTTGCGGCACCAGGCACAGCGATTGTTACACAGATTGTAGTTGCACGTGACGGAAAAGATAAGAATATGACCAGTTTGGGAATGGGAATGAATGGCGGAATTCTTGGAGTGCCTATGGGCTTTTTAGATTTTGCACCAGAACCACCAGCACCCTCAGCAACACCCGTCACCGTAACGGAGCACGTTGATTTGTCTTGCAATCCCAATACTGACACTCGCGATTTATCAAACCCCACAGAAGCACTTGATATAGACAATCATTTAGCTCAACATATGATACAACGTTTGGATCAATCACCAATGCATACAATGCATCACCAAACCGGTGATGAGAGCAATTCAAATTTGGTGCAACATATCAAAAGTGAAGTGGTTGATGCGAAACAGcaacaaatacaacaacaacaacagcatcaCCAAACACAGCAAAATCAGTTGCATGCTCAACAACTCACATCaaatcaacaacagcaacaacaacaccaacagcaaCATCAATTACATCAACAACCTTCTCACTCACATTCAacacatcaacaacaacaatcacatCAGGACTTATCTGGAGCCACAGTTATGGAAATCGATCCAAGTCAAATAAAACATGAACCCGGCATGATTATAACACCGGAAATCGTTAATATGATGACAACTGGACATATGGatatgtataacTCAGACACAAGTGAGGATTCAATGATGATAGCAAATGGCTCTCCTAATGATCAAAATGAGCCGCATTACACTAATTTGGACCAACCACATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAACCAAAATATGAGTCTAACAAAGGCTTCAGTTACATATGGTATACCATCTACAACTTTGTGGCAACGTGCCCATCGTATGGGTATCGAAACACCCAAAAAAGAAGGCGGTACGAAATCCTGGAATGAAGATTCATTAAATAATGCCTTAGAGGCCCTACGCTCTGGACAAATTTCAGCAAATAAGGCATCAAAGGCATTTGGTATACCATCTTCGACATTATATAAAATTGCACGACGCGAAGGTATACGTTTGGCGGCACCATTTAATGCAGCGCCAACAACGTGGACTCCGGAAGACTTGGAACGAGCATTAGAAGCAATACGTGCTGGTCATACGTCCGTTCAAAAAGCTAGTGCCGAGTTTGGAATTCCAACTGgAACATTATATGGTCGCTGCAAACGTGAAGGTATTGAATTGTCTCGCTCGAATCCAACGCCTTGGTCGGAAGACGCAATGAATGAAGCTCTCAATTCAGTTCGtattgGTCAAATGTCCATTAACCAGGCAGCGATTCATTACAATCTGCCTTATAGCTCATTGTATGGTCGCTTCAAGCGTGGAAAATATGACGTGGCTAACACCAGTAGCACCTCCATTAATAATACATCAGGGAATACTTCGGGAAGCATCGAAATTATAGAGCATAGTCAAGAAAACTCGCAACAGTTTCAATATAGTCCGTCACCACACCAACAAACGCAGCACGGCGTTCAATCCCAATCCCAGACCCCTCAACATTTAACGCAACATGTAGTACACATTCAGCAGCCACAGGTTCACCATCAGCAAGTCCATGGTCAGCAGCAACAACATATCCAACAGCAACAGGATGTTGTAACATCCAGTAGCCAGGTAGCTCATAGCAGCTCAGCTGCTGGACAGCAGCAGCAAATTCAACAGATTTATCATCATCATGGCACACCGGAAAGAAGTTGA
- Protein Sequence
- MLDELRPEAQSDQTSPGESGLLRTAEQLKIKGLCETAENTDDLSDTATATITVSENIQQAVVGNIINTAVTPGQSSPVTQQQQQQQQQQQQQQHITNATVLTHNIGSVAATNTQQIASPGANSATQLLAAGSSSSQHSQSGRKSRVRKRSKSPELQQQGNNAQQQIQQHSQTILIQNQNQAGIVNLQQTSSGNYIPVSGVQTVTSSVVGQQQAVIASDESDTDKPALSKICKTETASASPASSTSGVSTSNNAGSVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPNTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTMHHQTGDESNSNLVQHIKSEVVDAKQQQIQQQQQHHQTQQNQLHAQQLTSNQQQQQQHQQQHQLHQQPSHSHSTHQQQQSHQDLSGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQPHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSSTSINNTSGNTSGSIEIIEHSQENSQQFQYSPSPHQQTQHGVQSQSQTPQHLTQHVVHIQQPQVHHQQVHGQQQQHIQQQQDVVTSSSQVAHSSSAAGQQQQIQQIYHHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- -
- 80% Identity
- -